Os02g0456200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to G1 to S phase transition protein 1 homolog.
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Os02g0456200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to G1 to S phase transition protein 1 homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.64 | 0.338 | 2.96 | 0.0182 | 0.122 | -1.13 | 0.306 | 4.14 | 0.0175 | 10.3 | 50.13 | 9 | -- | -- |
| 56.09 | 0.349 | 2.95 | 0.018 | 0.11 | -0.494 | 0.0481 | -- | 0.0101 | 9.99 | 51.52 | 7 | -- | -- |
| 50.68 | 0.332 | 2.97 | 0.0357 | 0.109 | -1.04 | -- | 3.89 | -0.000268 | 10.7 | 51 | 6 | -- | -- |
| 55.99 | 0.348 | 2.95 | 0.0188 | 0.11 | -0.506 | -- | -- | 0.0103 | 10.1 | 51.81 | 6 | -- | -- |
| 51.37 | 0.334 | 2.97 | 0.0395 | -- | -1.05 | -- | 3.65 | 0.011 | -- | 50.81 | 6 | -- | -- |
| 59.17 | 0.361 | 2.95 | 0.0217 | 0.142 | -- | -0.0107 | -- | -0.00969 | 11.4 | -- | -- | -- | -- |
| 59.17 | 0.36 | 2.95 | 0.0212 | 0.142 | -- | -- | -- | -0.00974 | 11.4 | -- | -- | -- | -- |
| 56.71 | 0.351 | 2.95 | 0.0173 | -- | -0.534 | -- | -- | 0.0112 | -- | 51.75 | 6 | -- | -- |
| 56 | 0.349 | 2.95 | -- | 0.11 | -0.506 | -- | -- | 0.00826 | 10.1 | 51.83 | 6 | -- | -- |
| 60.43 | 0.363 | 2.96 | 0.0176 | -- | -- | -- | -- | -0.0111 | -- | -- | -- | -- | -- |
| 59.18 | 0.36 | 2.96 | -- | 0.142 | -- | -- | -- | -0.0121 | 11.4 | -- | -- | -- | -- |
| 56.72 | 0.351 | 2.95 | -- | -- | -0.534 | -- | -- | 0.00931 | -- | 51.72 | 6 | -- | -- |
| 60.44 | 0.363 | 2.96 | -- | -- | -- | -- | -- | -0.0131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.39 | humidity | 70 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 2 | 41.41 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 4 | 41.53 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 12 | 41.85 | humidity | 70 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 21 | 42.68 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 31 | 42.68 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 50 | 44.53 | wind | 9 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 51 | 44.63 | atmosphere | 1010 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 116 | 45.04 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 1 |
| 117 | 45.04 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 162 | 45.28 | atmosphere | 1010 | 30 | > th | dose dependent | sin | 23 | NA |
| 564 | 46.94 | humidity | 50 | 10 | > th | dose independent | sin | 7 | NA |
| 589 | 47.15 | wind | 9 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 721 | 48.53 | humidity | 60 | 270 | < th | dose independent | rect. | 10 | 1 |
| 738 | 48.88 | wind | 9 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 787 | 49.75 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 803 | 50.04 | humidity | 70 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 807 | 50.08 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 818 | 50.09 | humidity | 70 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 839 | 50.17 | wind | 7 | 90 | > th | dose independent | rect. | 3 | 6 |
| 841 | 50.18 | humidity | 70 | 4320 | > th | dose independent | rect. | 4 | 3 |
| 844 | 50.18 | wind | 7 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 846 | 50.19 | wind | 7 | 90 | > th | dose independent | rect. | 8 | 1 |
| 850 | 50.19 | wind | 7 | 90 | > th | dose dependent | rect. | 7 | 2 |
| 876 | 50.27 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 944 | 50.27 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 996 | 50.31 | humidity | 70 | 4320 | > th | dose independent | rect. | 6 | 1 |