Os04g0595300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RanBP2-type domain containing protein.
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Os04g0595300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RanBP2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.39 | 0.405 | 7.05 | 1.27 | 0.353 | -1.65 | -0.296 | 2.61 | 0.476 | 21.2 | 16.25 | 573 | -- | -- |
| 78.75 | 0.413 | 7.11 | 0.822 | 0.361 | -1.69 | 0.136 | -- | 0.35 | 21.8 | 14.41 | 645 | -- | -- |
| 74.64 | 0.402 | 7.05 | 1.27 | 0.357 | -1.65 | -- | 2.5 | 0.474 | 20.9 | 16.4 | 556 | -- | -- |
| 78.78 | 0.413 | 7.11 | 0.808 | 0.354 | -1.68 | -- | -- | 0.345 | 21.4 | 14.71 | 599 | -- | -- |
| 79.66 | 0.416 | 7.05 | 1.16 | -- | -1.43 | -- | 2.5 | 0.418 | -- | 15.9 | 439 | -- | -- |
| 113.05 | 0.498 | 7.15 | 0.404 | 0.215 | -- | -0.167 | -- | 0.0879 | 3.91 | -- | -- | -- | -- |
| 113.13 | 0.498 | 7.15 | 0.406 | 0.214 | -- | -- | -- | 0.0889 | 3.89 | -- | -- | -- | -- |
| 84.08 | 0.427 | 7.1 | 0.856 | -- | -1.38 | -- | -- | 0.347 | -- | 13.82 | 1805 | -- | -- |
| 94.12 | 0.452 | 7.13 | -- | 0.26 | -1.3 | -- | -- | 0.213 | 21.6 | 15.3 | 534 | -- | -- |
| 115.65 | 0.502 | 7.15 | 0.415 | -- | -- | -- | -- | 0.0946 | -- | -- | -- | -- | -- |
| 117.48 | 0.507 | 7.16 | -- | 0.222 | -- | -- | -- | 0.0436 | 3.87 | -- | -- | -- | -- |
| 96.92 | 0.459 | 7.13 | -- | -- | -1.18 | -- | -- | 0.188 | -- | 14.7 | 413 | -- | -- |
| 120.19 | 0.512 | 7.16 | -- | -- | -- | -- | -- | 0.0485 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 2 | 72.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 7 | 72.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 16 | 73.20 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 48 | 73.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 55 | 73.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 61 | 74.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 69 | 74.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 103 | 74.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 117 | 74.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 144 | 74.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 161 | 74.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 201 | 75.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 205 | 75.25 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 211 | 75.27 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 248 | 75.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 261 | 75.66 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 277 | 75.71 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 299 | 75.81 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 300 | 75.81 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 324 | 75.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 334 | 75.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 363 | 76.12 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 394 | 76.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 417 | 76.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 425 | 76.32 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 447 | 76.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 496 | 76.50 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 548 | 76.61 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 610 | 76.75 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 670 | 76.88 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 22 |
| 681 | 76.91 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 698 | 76.94 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 731 | 76.97 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 736 | 76.98 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 739 | 76.98 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 756 | 77.00 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 765 | 77.01 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 784 | 77.03 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 806 | 77.06 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 807 | 77.06 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 817 | 77.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 938 | 77.21 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 23 |