BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0652700 Os04g0652700|AK106059
(290 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0652700 Similar to Nuclease I 568 e-162
Os01g0128200 Similar to Nuclease I 346 1e-95
Os01g0128100 Similar to Bifunctional nuclease (Fragment) 300 7e-82
Os04g0636400 Similar to Senescence-associated protein 6 73 2e-13
>Os04g0652700 Similar to Nuclease I
Length = 290
Score = 568 bits (1463), Expect = e-162, Method: Compositional matrix adjust.
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 23 TDHAWGKEGHYMVCKIAEGFLTKEAATAVKELLPGWAGGELAETCSWADTERFRYRWSSP 82
TDHAWGKEGHYMVCKIAEGFLTKEAATAVKELLPGWAGGELAETCSWADTERFRYRWSSP
Sbjct: 23 TDHAWGKEGHYMVCKIAEGFLTKEAATAVKELLPGWAGGELAETCSWADTERFRYRWSSP 82
Query: 83 LHFADTPGDCQFNYARDCHNTNGEKDMCVVGAINNYTNALEDSSSPYDPTESLMFLAHFV 142
LHFADTPGDCQFNYARDCHNTNGEKDMCVVGAINNYTNALEDSSSPYDPTESLMFLAHFV
Sbjct: 83 LHFADTPGDCQFNYARDCHNTNGEKDMCVVGAINNYTNALEDSSSPYDPTESLMFLAHFV 142
Query: 143 GDVHQPLHCGHVKDLGGNTIIVHWYTRKSNLHHVWDVNVIETALKEFYNEDVSTMIKAIK 202
GDVHQPLHCGHVKDLGGNTIIVHWYTRKSNLHHVWDVNVIETALKEFYNEDVSTMIKAIK
Sbjct: 143 GDVHQPLHCGHVKDLGGNTIIVHWYTRKSNLHHVWDVNVIETALKEFYNEDVSTMIKAIK 202
Query: 203 MNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACKAYEGVEQESTLEDDYFFAALPV 262
MNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACKAYEGVEQESTLEDDYFFAALPV
Sbjct: 203 MNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACKAYEGVEQESTLEDDYFFAALPV 262
Query: 263 VQKRIAQGGVRLAAILNRIFSGNKVQSS 290
VQKRIAQGGVRLAAILNRIFSGNKVQSS
Sbjct: 263 VQKRIAQGGVRLAAILNRIFSGNKVQSS 290
>Os01g0128200 Similar to Nuclease I
Length = 308
Score = 346 bits (888), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 203/265 (76%), Gaps = 4/265 (1%)
Query: 26 AWGKEGHYMVCKIAEGFLTKEAATAVKELLPGWAGGELAETCSWADTERFRYRWSSPLHF 85
AWGK+GH +VCKIAE +L+++AA AV+ELLP AGGEL+ C WAD RF Y WS PLH+
Sbjct: 33 AWGKQGHIIVCKIAEKYLSEKAAAAVEELLPESAGGELSTVCPWADEVRFHYYWSRPLHY 92
Query: 86 ADTPGDCQFNYARDCHNTNGEKDMCVVGAINNYTNALE---DSSSPYDPTESLMFLAHFV 142
A+TP C F Y+RDCHN+ ++ MCVVGAINNYT+ L DS S Y+ TESLMFLAHFV
Sbjct: 93 ANTPQVCNFKYSRDCHNSRHQQGMCVVGAINNYTDQLYSYGDSKSSYNLTESLMFLAHFV 152
Query: 143 GDVHQPLHCGHVKDLGGNTIIVHWYTRKSNLHHVWDVNVIETALKEFYNEDVSTMIKAIK 202
GDVHQPLH G +D GGNTI VHWY RK NLHHVWD ++IETA+K+FYN + TM++A+K
Sbjct: 153 GDVHQPLHVGFEEDEGGNTIKVHWYRRKENLHHVWDNSIIETAMKDFYNRSLDTMVEALK 212
Query: 203 MNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACK-AYEGVEQESTLEDDYFFAALP 261
MN+TD WS + WE C ++ +TCA+ YA ES L+C AY+ VEQ+ TL DDYF++ P
Sbjct: 213 MNLTDGWSEDISHWENCGNKKETCANDYAIESIHLSCNYAYKDVEQDITLGDDYFYSRYP 272
Query: 262 VVQKRIAQGGVRLAAILNRIFSGNK 286
+V+KR+AQ G+RLA ILNRIF +K
Sbjct: 273 IVEKRLAQAGIRLALILNRIFGEDK 297
>Os01g0128100 Similar to Bifunctional nuclease (Fragment)
Length = 291
Score = 300 bits (769), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 147/266 (55%), Positives = 182/266 (68%), Gaps = 7/266 (2%)
Query: 25 HAWGKEGHYMVCKIAEGFLTKEAATAVKELLPGWAGGELAETCSWADTERFRYRWSSPLH 84
HAWG GH +VC+IA+G L+ AA AV+ LLP +AGG L+ CSWAD + RY WS+PLH
Sbjct: 26 HAWGIHGHLIVCQIAQGRLSDAAAAAVRGLLPSYAGGNLSSLCSWADGVKLRYPWSAPLH 85
Query: 85 FADTPGD-CQFNYARDCHNTNGEKDMCVVGAINNYTNAL--EDSSSP---YDPTESLMFL 138
+ DTP C + Y RDC + + + CV GAINNYT+ L D++SP Y+ T++L+FL
Sbjct: 86 YIDTPDHLCSYTYDRDCKDEDSFRGRCVAGAINNYTSQLLTYDATSPSTQYNLTQALLFL 145
Query: 139 AHFVGDVHQPLHCGHVKDLGGNTIIVHWYTRKSNLHHVWDVNVIETALKEFYNEDVSTMI 198
AHFVGD+HQPLH G D GGNTI VHWYTRK+ LHHVWD N+I+TA ++Y E V+ +
Sbjct: 146 AHFVGDIHQPLHVGFTSDKGGNTIDVHWYTRKTVLHHVWDDNIIKTAENDYYGEGVAEFV 205
Query: 199 KAIKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACK-AYEGVEQESTLEDDYFF 257
A+ NIT EWS WE C TC D YA ES AC AY+ V ++S LED YF
Sbjct: 206 DALMQNITGEWSQRVPGWEECSKNQTTCPDTYASESIAAACDWAYKDVTEDSLLEDAYFG 265
Query: 258 AALPVVQKRIAQGGVRLAAILNRIFS 283
+ LPVV R+AQGGVRLAA LNRIFS
Sbjct: 266 SRLPVVNLRLAQGGVRLAATLNRIFS 291
>Os04g0636400 Similar to Senescence-associated protein 6
Length = 141
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 25 HAWGKEGHYMVCKIAEGFLTKEAATAVKELLPGWAGGELAETCSWADTER--FRYRWSSP 82
H+W KEGH + C+IA+ L AA AV+ LL A G+L+ C W D R ++YRW+SP
Sbjct: 28 HSWSKEGHMLTCRIAQDLLEPAAAHAVRNLLTEEADGDLSALCVWPDQVRHWYKYRWTSP 87
Query: 83 LHFADT 88
LHF DT
Sbjct: 88 LHFIDT 93
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,816,797
Number of extensions: 414246
Number of successful extensions: 859
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 853
Number of HSP's successfully gapped: 4
Length of query: 290
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 190
Effective length of database: 11,814,401
Effective search space: 2244736190
Effective search space used: 2244736190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)