Os04g0652700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nuclease I.
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Os04g0652700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nuclease I.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.69 | 0.594 | 10.2 | -4.77 | 1.17 | 2.77 | -0.641 | 8.37 | -1.11 | 5.53 | 0.7651 | 5786 | -- | -- |
| 201.44 | 0.661 | 9.98 | -3.54 | 0.939 | 1.41 | -0.955 | -- | -0.788 | 5.91 | 2.782 | 7600 | -- | -- |
| 156.34 | 0.582 | 10.2 | -4.49 | 1.19 | 3.01 | -- | 8.48 | -1.14 | 5.55 | 0.002356 | 5777 | -- | -- |
| 160.51 | 0.59 | 9.93 | -2.61 | 0.945 | 1.78 | -- | -- | -0.481 | 5.44 | 2.126 | 30793 | -- | -- |
| 184.31 | 0.632 | 10.2 | -4.41 | -- | 3.19 | -- | 8.36 | -1.05 | -- | 0.06429 | 9215 | -- | -- |
| 221.75 | 0.698 | 10.1 | -3.79 | 1.15 | -- | -0.72 | -- | -1.1 | 5.52 | -- | -- | -- | -- |
| 222.93 | 0.699 | 10.1 | -3.79 | 1.15 | -- | -- | -- | -1.1 | 5.38 | -- | -- | -- | -- |
| 200.01 | 0.659 | 9.91 | -2.45 | -- | 2.17 | -- | -- | -0.309 | -- | 2.65 | 30899 | -- | -- |
| 179.06 | 0.623 | 9.82 | -- | 1.18 | 3.07 | -- | -- | 0.159 | 5.24 | 0.01 | 47520 | -- | -- |
| 291.33 | 0.798 | 10.1 | -3.76 | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
| 602.3 | 1.15 | 9.97 | -- | 1.08 | -- | -- | -- | -0.676 | 5.52 | -- | -- | -- | -- |
| 248.61 | 0.734 | 9.79 | -- | -- | 3.19 | -- | -- | 0.209 | -- | 0.01 | 47520 | -- | -- |
| 663.29 | 1.2 | 9.99 | -- | -- | -- | -- | -- | -0.653 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.37 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 2 | 140.39 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 5 |
| 5 | 140.81 | radiation | 20 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 6 | 141.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 7 | 141.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 21 | 142.36 | radiation | 30 | 43200 | > th | dose dependent | rect. | 15 | 17 |
| 24 | 142.68 | humidity | 80 | 43200 | > th | dose dependent | rect. | 13 | 16 |
| 26 | 142.86 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 28 | 142.95 | radiation | 20 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 46 | 143.09 | radiation | 40 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 53 | 143.29 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 55 | 143.38 | radiation | 40 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 58 | 143.40 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 60 | 143.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 69 | 143.53 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 74 | 143.65 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 96 | 143.80 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 97 | 143.80 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 102 | 143.89 | humidity | 80 | 43200 | > th | dose dependent | sin | 14 | NA |
| 104 | 143.92 | radiation | 40 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 121 | 144.30 | radiation | 30 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 123 | 144.32 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 126 | 144.34 | humidity | 80 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 128 | 144.35 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 134 | 144.50 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 7 |
| 143 | 144.74 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 180 | 145.02 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 183 | 145.04 | radiation | 10 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 195 | 145.14 | radiation | 10 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 205 | 145.29 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 212 | 145.46 | temperature | 20 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 233 | 145.89 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 250 | 146.05 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 18 |
| 252 | 146.08 | radiation | 10 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 253 | 146.10 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 254 | 146.11 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 259 | 146.18 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 260 | 146.19 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 267 | 146.24 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 302 | 146.48 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 304 | 146.51 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 305 | 146.51 | radiation | 30 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 337 | 146.84 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 352 | 146.98 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 14 |
| 359 | 147.01 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 362 | 147.04 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 383 | 147.21 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 392 | 147.27 | temperature | 20 | 43200 | < th | dose dependent | sin | 1 | NA |
| 401 | 147.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 12 |
| 411 | 147.41 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 414 | 147.43 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 17 |
| 434 | 147.45 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 4 |
| 440 | 147.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 441 | 147.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 13 |
| 518 | 147.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 6 |
| 534 | 147.74 | radiation | 1 | 43200 | < th | dose dependent | sin | 4 | NA |
| 556 | 147.79 | temperature | 20 | 43200 | < th | dose dependent | rect. | 10 | 21 |
| 627 | 147.91 | temperature | 20 | 43200 | < th | dose dependent | no | NA | NA |
| 638 | 147.93 | temperature | 20 | 43200 | < th | dose dependent | rect. | 13 | 23 |
| 665 | 147.98 | radiation | 40 | 43200 | < th | dose dependent | rect. | 17 | 9 |
| 815 | 148.27 | temperature | 20 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 825 | 148.29 | radiation | 30 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 853 | 148.35 | temperature | 20 | 43200 | < th | dose dependent | sin | 15 | NA |
| 885 | 148.41 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 6 |
| 911 | 148.47 | temperature | 20 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 919 | 148.49 | temperature | 20 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 962 | 148.58 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 994 | 148.63 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |