BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0652700 Os04g0652700|AK106059
(290 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G68290.1 | chr1:25596718-25598264 FORWARD LENGTH=291 310 4e-85
AT4G21585.1 | chr4:11477988-11479953 FORWARD LENGTH=300 301 3e-82
AT4G21600.1 | chr4:11485319-11487235 FORWARD LENGTH=297 280 7e-76
AT4G21590.1 | chr4:11480524-11482574 FORWARD LENGTH=295 267 4e-72
AT1G11190.1 | chr1:3750338-3752696 REVERSE LENGTH=306 261 2e-70
>AT1G68290.1 | chr1:25596718-25598264 FORWARD LENGTH=291
Length = 290
Score = 310 bits (795), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 147/265 (55%), Positives = 187/265 (70%), Gaps = 8/265 (3%)
Query: 25 HAWGKEGHYMVCKIAEGFLTKEAATAVKELLPGWAGGELAETCSWADTERFRYRWSSPLH 84
H WGKEGH ++CKIA+ L + AA AVKELLP A G+L+ C WAD +FRY WSSPLH
Sbjct: 26 HGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWSSPLH 85
Query: 85 FADTPGDCQFNYARDCHNTNGEKDMCVVGAINNYTNAL------EDSSSPYDPTESLMFL 138
+ +TP C + Y RDC + +GEK CV GAI NYT L S S Y+ TE+L+F+
Sbjct: 86 YINTPDACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQYNLTEALLFV 145
Query: 139 AHFVGDVHQPLHCGHVKDLGGNTIIVHWYTRKSNLHHVWDVNVIETALKEFYNEDVSTMI 198
+HF+GD+HQPLH + D GGNTI VHWYTRK+NLHH+WD N+IETA + YN + M+
Sbjct: 146 SHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADLYNSALEGMV 205
Query: 199 KAIKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACK-AYEGVEQESTLEDDYFF 257
A+K NIT EW+ + K+WETC +T C D YA E + AC AY+GV + TLED+YF+
Sbjct: 206 DALKKNITTEWADQVKRWETCTKKT-ACPDIYASEGIQAACDWAYKGVTEGDTLEDEYFY 264
Query: 258 AALPVVQKRIAQGGVRLAAILNRIF 282
+ LP+V +R+AQGGVRLAA LNRIF
Sbjct: 265 SRLPIVYQRLAQGGVRLAATLNRIF 289
>AT4G21585.1 | chr4:11477988-11479953 FORWARD LENGTH=300
Length = 299
Score = 301 bits (771), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 143/268 (53%), Positives = 185/268 (69%), Gaps = 10/268 (3%)
Query: 27 WGKEGHYMVCKIAEGFLTKEAATAVKELLPGWAGGELAETCSWAD--TERFRYRWSSPLH 84
WGKEGHY VCKIAE + +E AVK+LLP A G+LA CSW D +++RW+SPLH
Sbjct: 25 WGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSWPDEIKHHWQWRWTSPLH 84
Query: 85 FADTPG-DCQFNYARDCHNTNGEKDMCVVGAINNYTNAL------EDSSSPYDPTESLMF 137
+ DTP C + Y RDCH+T+ +D CV GAI NYT L D+ Y+ TE+LMF
Sbjct: 85 YVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSASENSDTIVHYNLTEALMF 144
Query: 138 LAHFVGDVHQPLHCGHVKDLGGNTIIVHWYTRKSNLHHVWDVNVIETALKEFYNEDVSTM 197
L+HF+GD+HQPLH G + D GGNTI V WY RK+NLHHVWD +IE+ALK +YN+ + M
Sbjct: 145 LSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNMIIESALKTYYNKSLPLM 204
Query: 198 IKAIKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACK-AYEGVEQESTLEDDYF 256
I+A++ N+T++WS + WE+C+ C + YA ES LACK AY +TL DDYF
Sbjct: 205 IEALQANLTNDWSNDVPLWESCQLNQTACPNPYASESINLACKYAYRNATPGTTLGDDYF 264
Query: 257 FAALPVVQKRIAQGGVRLAAILNRIFSG 284
+ LP+V+KR+AQGG+RLAA LNRIFS
Sbjct: 265 LSRLPIVEKRLAQGGIRLAATLNRIFSS 292
>AT4G21600.1 | chr4:11485319-11487235 FORWARD LENGTH=297
Length = 296
Score = 280 bits (716), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 138/269 (51%), Positives = 183/269 (68%), Gaps = 11/269 (4%)
Query: 27 WGKEGHYMVCKIAEGFLTKEAATAVKELLP-GWAGGELAETCSWAD--TERFRYRWSSPL 83
WGK+GHY VCK+AEGF + AVK+LLP GG LA+ CSW D + +++W+S L
Sbjct: 21 WGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFCSWPDEIKKLSQWQWTSTL 80
Query: 84 HFADTPG-DCQFNYARDCHNTNGEKDMCVVGAINNYTNALEDSSSP------YDPTESLM 136
H+ +TP C + Y RDCH+T+ KD CV GAI NYTN L +S Y+ TE+L+
Sbjct: 81 HYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMSASENSQNIVHYNLTEALL 140
Query: 137 FLAHFVGDVHQPLHCGHVKDLGGNTIIVHWYTRKSNLHHVWDVNVIETALKEFYNEDVST 196
FL+H++GDVHQPLH G + DLGGNTIIV+WY KSNLHHVWD +I++AL+ +YN +
Sbjct: 141 FLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWDNMIIDSALETYYNSSLPH 200
Query: 197 MIKAIKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACK-AYEGVEQESTLEDDY 255
MI+A++ + + WS + W++C K C + YA ES LACK AY +TL D+Y
Sbjct: 201 MIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYASESIDLACKYAYRNATPGTTLGDEY 260
Query: 256 FFAALPVVQKRIAQGGVRLAAILNRIFSG 284
F + LPVV+KR+AQGG+RLAA LNRIFS
Sbjct: 261 FLSRLPVVEKRLAQGGIRLAATLNRIFSA 289
>AT4G21590.1 | chr4:11480524-11482574 FORWARD LENGTH=295
Length = 294
Score = 267 bits (683), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 133/270 (49%), Positives = 174/270 (64%), Gaps = 15/270 (5%)
Query: 27 WGKEGHYMVCKIAEGFLTKEAATAVKELLPGWAGGELAETCSWAD--TERFRYRWSSPLH 84
WG GHY VCKIA+ + ++ AVK+LLP A GELA CSW D + ++RW+S LH
Sbjct: 25 WGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCSWPDEIKKLPQWRWTSALH 84
Query: 85 FADTPG-DCQFNYARDCHNTNGEKDMCVVGAINNYTNALEDSSSP------YDPTESLMF 137
FADTP C + Y+RDC KD CV GAI NYTN L +S Y+ TE+LMF
Sbjct: 85 FADTPDYKCNYEYSRDC-----PKDWCVTGAIFNYTNQLMSTSENSQSIVHYNLTEALMF 139
Query: 138 LAHFVGDVHQPLHCGHVKDLGGNTIIVHWYTRKSNLHHVWDVNVIETALKEFYNEDVSTM 197
L+H++GD+HQPLH G + DLGGN I VHWY +++NLH VWD +IE+AL+ +YN + M
Sbjct: 140 LSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDDMIIESALETYYNSSLPRM 199
Query: 198 IKAIKMNITDEWSTEEKQWETCRSRTKTCADKYAEESAKLACK-AYEGVEQESTLEDDYF 256
I ++ + + WS + WE+C+ C + YA ES LACK AY +TL D YF
Sbjct: 200 IHELQAKLKNGWSNDVPSWESCQLNQTACPNPYASESIDLACKYAYRNATAGTTLGDYYF 259
Query: 257 FAALPVVQKRIAQGGVRLAAILNRIFSGNK 286
+ LPVV+KR+AQGG+RLA LNRIFS +
Sbjct: 260 VSRLPVVEKRLAQGGIRLAGTLNRIFSAKR 289
>AT1G11190.1 | chr1:3750338-3752696 REVERSE LENGTH=306
Length = 305
Score = 261 bits (668), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/270 (48%), Positives = 175/270 (64%), Gaps = 11/270 (4%)
Query: 26 AWGKEGHYMVCKIAEGFLTKEAATAVKELLPGWAGGELAETCSWADTER--FRYRWSSPL 83
+W KEGH + C+IA+ L A V+ LLP + G+L+ C W D R ++YRW+S L
Sbjct: 28 SWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYRWTSHL 87
Query: 84 HFADTPGD-CQFNYARDCHNTNGEKDMCVVGAINNYTNALED-----SSSPYDPTESLMF 137
H+ DTP C + Y+RDCH+ +G KDMCV GAI N+T+ L+ S Y+ TE+L+F
Sbjct: 88 HYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQHYGEGTSDRRYNMTEALLF 147
Query: 138 LAHFVGDVHQPLHCGHVKDLGGNTIIVHWYTRKSNLHHVWDVNVIETALKEFYNEDVSTM 197
L+HF+GD+HQP+H G D GGNTI + WY KSNLHHVWD +I TALKE Y++++ +
Sbjct: 148 LSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYDKNLDLL 207
Query: 198 IKAIKMNITDE-WSTEEKQWETCRSRTKTCADKYAEESAKLACK-AYEGVEQESTLEDDY 255
+ ++ NIT+ W + W C C KYA ES KLACK Y+GV+ TL ++Y
Sbjct: 208 QEDLEKNITNGLWHDDLSSWTECNDLI-ACPHKYASESIKLACKWGYKGVKSGETLSEEY 266
Query: 256 FFAALPVVQKRIAQGGVRLAAILNRIFSGN 285
F LP+V KRI QGGVRLA ILNR+FS +
Sbjct: 267 FNTRLPIVMKRIVQGGVRLAMILNRVFSDD 296
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,327,771
Number of extensions: 271920
Number of successful extensions: 618
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 5
Length of query: 290
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,419,801
Effective search space: 1616601792
Effective search space used: 1616601792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)