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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0128100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Bifunctional nuclease (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.43 (0.0476) R2 : 0.18
β1 : -1.73 (0.174) R2dD : 0.182 R2D : 0.153
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.336 (0.102) R2dN8 : 0.0262 R2N8 : -0.00286
σ : 0.894
deviance : 366.26
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
329.48 0.853 4.09 0.73 0.334 -1.13 0.255 15.8 -0.21 10.5 31.05 1278 -- --
341.59 0.861 4.4 -1.91 0.31 0.681 0.505 -- -0.207 9.19 30.2 2731 -- --
329.59 0.846 4.09 0.754 0.34 -1.16 -- 16.1 -0.209 11 31.03 1242 -- --
341.92 0.861 4.4 -1.92 0.342 0.672 -- -- -0.222 10.4 29.99 2815 -- --
336.38 0.854 4.09 0.84 -- -1.25 -- 16.4 -0.218 -- 31.07 1284 -- --
359.65 0.889 4.43 -1.75 0.206 -- 1.3 -- -0.336 6.74 -- -- -- --
361.19 0.89 4.43 -1.72 0.291 -- -- -- -0.336 9.81 -- -- -- --
348.62 0.87 4.41 -1.9 -- 0.644 -- -- -0.208 -- 30.2 2887 -- --
430.86 0.967 4.37 -- 0.33 0.404 -- -- -0.0624 11.1 31.72 1357 -- --
366.26 0.894 4.43 -1.73 -- -- -- -- -0.336 -- -- -- -- --
439.36 0.981 4.38 -- 0.298 -- -- -- -0.144 10.2 -- -- -- --
437.03 0.974 4.37 -- -- 0.387 -- -- -0.0684 -- 33.3 1443 -- --
444.77 0.984 4.39 -- -- -- -- -- -0.144 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 323.45 temperature 20.0 720 > th dose dependent rect. 19 11
6 324.53 radiation 20.0 4320 > th dose dependent rect. 16 1
22 324.67 temperature 20.0 270 > th dose dependent rect. 4 2
23 324.88 humidity 70.0 1440 > th dose independent rect. 18 11
24 324.91 humidity 70.0 1440 > th dose independent rect. 18 2
31 325.12 humidity 70.0 1440 > th dose independent rect. 18 6
37 325.34 humidity 70.0 1440 > th dose independent rect. 17 15
42 325.48 temperature 20.0 270 > th dose dependent rect. 3 4
56 325.75 temperature 20.0 270 > th dose independent rect. 4 1
58 325.75 temperature 20.0 270 > th dose dependent rect. 1 7
92 326.33 atmosphere 1000.0 720 > th dose independent rect. 14 12
95 326.73 humidity 70.0 1440 > th dose independent sin 12 NA
96 326.75 wind 1.0 270 < th dose independent rect. 4 2
100 326.93 wind 1.0 4320 < th dose independent rect. 4 1
101 326.98 temperature 10.0 720 > th dose dependent rect. 18 12
104 327.11 humidity 70.0 1440 < th dose independent rect. 17 3
120 327.17 temperature 25.0 4320 > th dose dependent rect. 22 1
145 327.67 humidity 70.0 1440 < th dose independent rect. 18 1
146 327.70 precipitation 0.1 14400 > th dose dependent rect. 20 6
147 327.74 precipitation 0.1 14400 < th dose independent rect. 20 1
148 327.74 precipitation 0.1 14400 < th dose dependent rect. 20 1
153 327.78 temperature 10.0 720 > th dose dependent rect. 18 6
157 327.86 precipitation 0.1 14400 > th dose independent rect. 20 1
163 327.96 precipitation 0.1 14400 < th dose independent rect. 20 6
164 327.96 precipitation 0.1 14400 < th dose dependent rect. 20 6
182 328.14 precipitation 0.1 14400 > th dose independent rect. 20 6
187 328.20 precipitation 0.1 14400 > th dose dependent rect. 20 1
204 328.31 temperature 25.0 10 < th dose dependent rect. 24 20
221 328.69 precipitation 0.1 14400 < th dose independent rect. 20 3
223 328.69 precipitation 0.1 14400 < th dose dependent rect. 20 3
233 328.85 precipitation 0.1 14400 > th dose independent rect. 20 3
236 328.93 temperature 20.0 720 > th dose dependent sin 11 NA
238 328.96 wind 1.0 4320 > th dose independent rect. 4 1
259 329.33 atmosphere 995.0 43200 < th dose dependent rect. 15 12
283 329.60 wind 7.0 43200 > th dose dependent rect. 18 11
285 329.65 humidity 80.0 1440 < th dose dependent rect. 18 3
290 329.69 atmosphere 1000.0 720 < th dose independent rect. 17 6
305 329.88 wind 1.0 14400 < th dose dependent rect. 10 1
309 329.93 radiation 10.0 1440 > th dose independent rect. 15 3
329 330.00 atmosphere 1000.0 270 < th dose independent rect. 16 14
340 330.10 wind 1.0 14400 < th dose independent rect. 10 1
346 330.18 humidity 70.0 1440 < th dose independent sin 12 NA
354 330.26 wind 7.0 4320 < th dose independent rect. 21 1
355 330.26 wind 7.0 43200 > th dose independent rect. 18 11
357 330.26 atmosphere 1010.0 270 < th dose dependent rect. 16 15
360 330.28 wind 1.0 14400 > th dose independent rect. 10 2
369 330.37 atmosphere 1010.0 90 < th dose dependent rect. 18 15
375 330.45 temperature 30.0 1440 > th dose independent rect. 18 17
379 330.47 temperature 30.0 1440 < th dose independent rect. 18 17
389 330.55 wind 1.0 270 < th dose dependent rect. 4 2
391 330.57 atmosphere 995.0 14400 > th dose independent rect. 6 14
393 330.58 radiation 30.0 4320 > th dose independent rect. 15 17
406 330.64 wind 7.0 43200 > th dose dependent rect. 18 5
418 330.73 wind 7.0 4320 > th dose independent rect. 21 1
427 330.80 temperature 30.0 1440 > th dose dependent rect. 13 1
433 330.85 wind 1.0 4320 < th dose dependent rect. 4 1
435 330.86 atmosphere 995.0 43200 < th dose independent sin 12 NA
436 330.87 temperature 20.0 270 > th dose independent rect. 2 19
446 330.95 atmosphere 995.0 43200 > th dose independent sin 12 NA
456 331.03 wind 1.0 43200 > th dose independent rect. 22 1
459 331.04 atmosphere 1000.0 720 < th dose independent rect. 18 1
471 331.11 radiation 30.0 4320 > th dose dependent rect. 15 17
472 331.12 temperature 30.0 1440 > th dose dependent rect. 16 22
474 331.13 humidity 80.0 1440 < th dose dependent rect. 18 1
475 331.14 atmosphere 1000.0 270 > th dose independent sin 13 NA
485 331.19 atmosphere 1005.0 10 < th dose dependent rect. 18 14
517 331.33 wind 7.0 43200 < th dose independent rect. 18 11
519 331.33 temperature 30.0 1440 > th dose dependent rect. 17 19
550 331.43 atmosphere 995.0 43200 > th dose independent rect. 18 7
558 331.45 temperature 30.0 720 < th dose dependent rect. 22 4
562 331.47 temperature 30.0 1440 < th dose independent rect. 17 19
573 331.53 radiation 30.0 4320 > th dose independent rect. 15 2
596 331.55 atmosphere 995.0 43200 < th dose independent rect. 18 6
605 331.59 atmosphere 995.0 43200 < th dose dependent rect. 17 7
609 331.62 wind 7.0 43200 > th dose independent rect. 1 1
617 331.68 wind 9.0 14400 > th dose independent rect. 11 1
630 331.77 wind 9.0 43200 < th dose independent rect. 18 5
631 331.79 temperature 30.0 1440 > th dose dependent sin 10 NA
636 331.82 atmosphere 1000.0 720 > th dose independent rect. 14 20
637 331.82 radiation 10.0 1440 < th dose dependent rect. 11 17
638 331.83 radiation 10.0 1440 < th dose dependent rect. 11 7
639 331.83 temperature 30.0 1440 > th dose dependent rect. 11 8
641 331.83 radiation 10.0 1440 < th dose dependent rect. 11 9
671 331.87 temperature 30.0 1440 < th dose independent rect. 9 3
677 331.88 radiation 10.0 1440 < th dose dependent rect. 11 11
680 331.89 atmosphere 995.0 43200 > th dose independent rect. 17 15
681 331.89 wind 7.0 4320 > th dose dependent rect. 21 1
685 331.90 radiation 10.0 1440 < th dose dependent rect. 11 13
709 331.93 atmosphere 995.0 43200 < th dose independent rect. 17 15
735 331.98 wind 1.0 90 < th dose independent rect. 4 7
736 331.98 temperature 30.0 1440 > th dose dependent sin 19 NA
740 332.00 temperature 30.0 1440 > th dose dependent no NA NA
741 332.00 atmosphere 995.0 43200 < th dose dependent rect. 16 9
841 332.03 wind 3.0 43200 < th dose dependent rect. 22 1
845 332.04 temperature 25.0 4320 > th dose independent rect. 20 5
853 332.07 atmosphere 1010.0 720 < th dose dependent rect. 18 2
857 332.09 temperature 30.0 1440 > th dose independent rect. 9 3
888 332.15 atmosphere 1000.0 720 > th dose independent sin 16 NA
922 332.18 wind 1.0 43200 < th dose independent rect. 22 1
931 332.21 atmosphere 995.0 43200 < th dose independent rect. 17 13
941 332.23 wind 1.0 90 < th dose independent rect. 4 5
943 332.23 temperature 20.0 270 > th dose independent rect. 1 21
951 332.25 radiation 20.0 1440 < th dose independent rect. 16 4
993 332.33 temperature 10.0 720 > th dose dependent sin 13 NA