BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0128100 Os01g0128100|AK071917
(291 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G68290.1 | chr1:25596718-25598264 FORWARD LENGTH=291 371 e-103
AT4G21585.1 | chr4:11477988-11479953 FORWARD LENGTH=300 313 8e-86
AT1G11190.1 | chr1:3750338-3752696 REVERSE LENGTH=306 285 3e-77
AT4G21590.1 | chr4:11480524-11482574 FORWARD LENGTH=295 281 4e-76
AT4G21600.1 | chr4:11485319-11487235 FORWARD LENGTH=297 280 6e-76
>AT1G68290.1 | chr1:25596718-25598264 FORWARD LENGTH=291
Length = 290
Score = 371 bits (952), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/270 (67%), Positives = 209/270 (77%), Gaps = 4/270 (1%)
Query: 23 APS-HAWGIHGHLIVCQIAQGRLSDAAAAAVRGLLPSYAGGNLSSLCSWADGVKLRYPWS 81
AP+ H WG GH I+C+IAQ RL + AA AV+ LLP A G+LSSLC WAD VK RY WS
Sbjct: 22 APNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWS 81
Query: 82 APLHYIDTPDHLCSYTYDRDCKDEDSFRGRCVAGAINNYTSQLLTYD-ATSPSTQYNLTQ 140
+PLHYI+TPD CSY Y+RDCKDE +GRCVAGAI NYT+QLL+Y A S +QYNLT+
Sbjct: 82 SPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQYNLTE 140
Query: 141 ALLFLAHFVGDIHQPLHVGFTSDKGGNTIDVHWYTRKTVLHHVWDDNIIKTAENDYYGEG 200
ALLF++HF+GDIHQPLHV + SDKGGNTI+VHWYTRK LHH+WD NII+TAE D Y
Sbjct: 141 ALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADLYNSA 200
Query: 201 VAEFVDALMQNITGEWSQRVPGWEECSKNQTTCPDTYASESIAAACDWAYKDVTEDSLLE 260
+ VDAL +NIT EW+ +V WE C+K +T CPD YASE I AACDWAYK VTE LE
Sbjct: 201 LEGMVDALKKNITTEWADQVKRWETCTK-KTACPDIYASEGIQAACDWAYKGVTEGDTLE 259
Query: 261 DAYFGSRLPVVNLRLAQGGVRLAATLNRIF 290
D YF SRLP+V RLAQGGVRLAATLNRIF
Sbjct: 260 DEYFYSRLPIVYQRLAQGGVRLAATLNRIF 289
>AT4G21585.1 | chr4:11477988-11479953 FORWARD LENGTH=300
Length = 299
Score = 313 bits (802), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 148/267 (55%), Positives = 188/267 (70%), Gaps = 3/267 (1%)
Query: 28 WGIHGHLIVCQIAQGRLSDAAAAAVRGLLPSYAGGNLSSLCSWADGVK--LRYPWSAPLH 85
WG GH VC+IA+ + AAV+ LLP A G+L+S+CSW D +K ++ W++PLH
Sbjct: 25 WGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSWPDEIKHHWQWRWTSPLH 84
Query: 86 YIDTPDHLCSYTYDRDCKDEDSFRGRCVAGAINNYTSQLLTYDATSPS-TQYNLTQALLF 144
Y+DTPD+ C+Y Y RDC D + RCV GAI NYT QL++ S + YNLT+AL+F
Sbjct: 85 YVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSASENSDTIVHYNLTEALMF 144
Query: 145 LAHFVGDIHQPLHVGFTSDKGGNTIDVHWYTRKTVLHHVWDDNIIKTAENDYYGEGVAEF 204
L+HF+GDIHQPLHVGF D+GGNTI V WY RKT LHHVWD+ II++A YY + +
Sbjct: 145 LSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNMIIESALKTYYNKSLPLM 204
Query: 205 VDALMQNITGEWSQRVPGWEECSKNQTTCPDTYASESIAAACDWAYKDVTEDSLLEDAYF 264
++AL N+T +WS VP WE C NQT CP+ YASESI AC +AY++ T + L D YF
Sbjct: 205 IEALQANLTNDWSNDVPLWESCQLNQTACPNPYASESINLACKYAYRNATPGTTLGDDYF 264
Query: 265 GSRLPVVNLRLAQGGVRLAATLNRIFS 291
SRLP+V RLAQGG+RLAATLNRIFS
Sbjct: 265 LSRLPIVEKRLAQGGIRLAATLNRIFS 291
>AT1G11190.1 | chr1:3750338-3752696 REVERSE LENGTH=306
Length = 305
Score = 285 bits (728), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 136/268 (50%), Positives = 173/268 (64%), Gaps = 4/268 (1%)
Query: 27 AWGIHGHLIVCQIAQGRLSDAAAAAVRGLLPSYAGGNLSSLCSWADGVK--LRYPWSAPL 84
+W GH++ C+IAQ L A V LLP Y G+LS+LC W D ++ +Y W++ L
Sbjct: 28 SWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYRWTSHL 87
Query: 85 HYIDTPDHLCSYTYDRDCKDEDSFRGRCVAGAINNYTSQLLTYDATSPSTQYNLTQALLF 144
HYIDTPD CSY Y RDC D+ + CV GAI N+TSQL Y + +YN+T+ALLF
Sbjct: 88 HYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQHYGEGTSDRRYNMTEALLF 147
Query: 145 LAHFVGDIHQPLHVGFTSDKGGNTIDVHWYTRKTVLHHVWDDNIIKTAENDYYGEGVAEF 204
L+HF+GDIHQP+HVGFTSD+GGNTID+ WY K+ LHHVWD II TA + Y + +
Sbjct: 148 LSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYDKNLDLL 207
Query: 205 VDALMQNIT-GEWSQRVPGWEECSKNQTTCPDTYASESIAAACDWAYKDVTEDSLLEDAY 263
+ L +NIT G W + W EC+ + CP YASESI AC W YK V L + Y
Sbjct: 208 QEDLEKNITNGLWHDDLSSWTECN-DLIACPHKYASESIKLACKWGYKGVKSGETLSEEY 266
Query: 264 FGSRLPVVNLRLAQGGVRLAATLNRIFS 291
F +RLP+V R+ QGGVRLA LNR+FS
Sbjct: 267 FNTRLPIVMKRIVQGGVRLAMILNRVFS 294
>AT4G21590.1 | chr4:11480524-11482574 FORWARD LENGTH=295
Length = 294
Score = 281 bits (718), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 137/267 (51%), Positives = 173/267 (64%), Gaps = 8/267 (2%)
Query: 28 WGIHGHLIVCQIAQGRLSDAAAAAVRGLLPSYAGGNLSSLCSWADGVKL--RYPWSAPLH 85
WG GH VC+IAQ + AV+ LLP A G L+++CSW D +K ++ W++ LH
Sbjct: 25 WGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCSWPDEIKKLPQWRWTSALH 84
Query: 86 YIDTPDHLCSYTYDRDCKDEDSFRGRCVAGAINNYTSQLLTYDATSPS-TQYNLTQALLF 144
+ DTPD+ C+Y Y RDC + CV GAI NYT+QL++ S S YNLT+AL+F
Sbjct: 85 FADTPDYKCNYEYSRDCP-----KDWCVTGAIFNYTNQLMSTSENSQSIVHYNLTEALMF 139
Query: 145 LAHFVGDIHQPLHVGFTSDKGGNTIDVHWYTRKTVLHHVWDDNIIKTAENDYYGEGVAEF 204
L+H++GDIHQPLH GF D GGN I VHWY ++T LH VWDD II++A YY +
Sbjct: 140 LSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDDMIIESALETYYNSSLPRM 199
Query: 205 VDALMQNITGEWSQRVPGWEECSKNQTTCPDTYASESIAAACDWAYKDVTEDSLLEDAYF 264
+ L + WS VP WE C NQT CP+ YASESI AC +AY++ T + L D YF
Sbjct: 200 IHELQAKLKNGWSNDVPSWESCQLNQTACPNPYASESIDLACKYAYRNATAGTTLGDYYF 259
Query: 265 GSRLPVVNLRLAQGGVRLAATLNRIFS 291
SRLPVV RLAQGG+RLA TLNRIFS
Sbjct: 260 VSRLPVVEKRLAQGGIRLAGTLNRIFS 286
>AT4G21600.1 | chr4:11485319-11487235 FORWARD LENGTH=297
Length = 296
Score = 280 bits (716), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 137/268 (51%), Positives = 177/268 (66%), Gaps = 4/268 (1%)
Query: 28 WGIHGHLIVCQIAQGRLSDAAAAAVRGLLP-SYAGGNLSSLCSWADGVKL--RYPWSAPL 84
WG GH VC++A+G D AAV+ LLP S GG L+ CSW D +K ++ W++ L
Sbjct: 21 WGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFCSWPDEIKKLSQWQWTSTL 80
Query: 85 HYIDTPDHLCSYTYDRDCKDEDSFRGRCVAGAINNYTSQLLTYDATSPS-TQYNLTQALL 143
HY++TP++ C+Y Y RDC D + CV GAI NYT+QL++ S + YNLT+ALL
Sbjct: 81 HYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMSASENSQNIVHYNLTEALL 140
Query: 144 FLAHFVGDIHQPLHVGFTSDKGGNTIDVHWYTRKTVLHHVWDDNIIKTAENDYYGEGVAE 203
FL+H++GD+HQPLH GF D GGNTI V+WY K+ LHHVWD+ II +A YY +
Sbjct: 141 FLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWDNMIIDSALETYYNSSLPH 200
Query: 204 FVDALMQNITGEWSQRVPGWEECSKNQTTCPDTYASESIAAACDWAYKDVTEDSLLEDAY 263
+ AL + WS VP W+ C +Q CP+ YASESI AC +AY++ T + L D Y
Sbjct: 201 MIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYASESIDLACKYAYRNATPGTTLGDEY 260
Query: 264 FGSRLPVVNLRLAQGGVRLAATLNRIFS 291
F SRLPVV RLAQGG+RLAATLNRIFS
Sbjct: 261 FLSRLPVVEKRLAQGGIRLAATLNRIFS 288
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.133 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,378,466
Number of extensions: 273432
Number of successful extensions: 530
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 5
Length of query: 291
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 193
Effective length of database: 8,419,801
Effective search space: 1625021593
Effective search space used: 1625021593
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)