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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0636400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Senescence-associated protein 6.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.92 (0.0491) R2 : 0.631
β1 : -4.25 (0.172) R2dD : 0.524 R2D : 0.37
β2 : 1.51 (0.12) R2dC : 0.132 R2C : 0.11
β3 : 1.36 (0.213) R2dE : 0.0578 R2E : 0.0026
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.548 (0.123) R2dN8 : 0.0329 R2N8 : 0.0251
σ : 0.862
deviance : 342.27
__
_____
C
peak time of C : 5.87
E
wheather : humidity
threshold : 79
memory length : 6876
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
319.73 0.84 4.88 -4.71 1.43 1.22 -1.97 3.31 -0.615 6.4 79.01 6094 -- --
338.73 0.857 4.93 -4.18 1.43 1.21 -1.95 -- -0.54 6.38 79 6168 -- --
328.01 0.844 4.87 -4.75 1.48 1.22 -- 3.37 -0.606 6.12 80 5959 -- --
342.27 0.862 4.92 -4.25 1.51 1.36 -- -- -0.548 5.87 79 6876 -- --
427.65 0.963 4.86 -4.77 -- 1.89 -- 3.36 -0.321 -- 78.75 4832 -- --
367.58 0.899 5.03 -3.96 1.54 -- -1.61 -- -1.02 6.3 -- -- -- --
373.51 0.905 5.03 -3.98 1.53 -- -- -- -1.02 6.08 -- -- -- --
438.16 0.975 4.88 -4.21 -- 1.82 -- -- -0.252 -- 74.98 6313 -- --
592.79 1.13 4.71 -- 0.801 2.1 -- -- 0.0489 5.87 95 27656 -- --
495.42 1.04 5.05 -3.94 -- -- -- -- -0.981 -- -- -- -- --
791.11 1.32 4.93 -- 1.48 -- -- -- -0.572 6.22 -- -- -- --
579.29 1.12 4.82 -- -- 3.02 -- -- 0.0452 -- 95 47520 -- --
904.2 1.4 4.95 -- -- -- -- -- -0.544 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 312.35 humidity 90.0 4320 > th dose dependent rect. 5 9
3 312.98 humidity 90.0 4320 > th dose dependent rect. 5 6
7 313.57 radiation 40.0 270 < th dose dependent rect. 3 7
10 313.96 radiation 20.0 270 < th dose independent rect. 2 8
12 314.31 atmosphere 995.0 270 > th dose dependent rect. 2 7
13 314.53 atmosphere 1000.0 270 > th dose independent rect. 2 7
16 315.14 temperature 20.0 270 > th dose dependent rect. 8 6
20 315.78 humidity 90.0 4320 > th dose independent rect. 6 2
25 316.23 humidity 90.0 4320 > th dose independent rect. 5 4
38 317.20 atmosphere 1000.0 270 > th dose independent rect. 3 16
44 317.36 temperature 25.0 270 > th dose dependent rect. 24 13
54 317.78 radiation 40.0 270 < th dose dependent rect. 14 19
57 317.86 humidity 90.0 4320 > th dose dependent sin 2 NA
63 318.03 humidity 90.0 4320 > th dose dependent rect. 4 15
89 318.85 humidity 90.0 4320 > th dose independent rect. 5 9
98 319.12 temperature 25.0 270 > th dose dependent rect. 19 18
108 319.47 humidity 90.0 4320 < th dose independent rect. 6 2
109 319.47 temperature 25.0 10 > th dose dependent rect. 9 7
116 319.69 atmosphere 1000.0 270 > th dose independent rect. 14 18
128 320.02 temperature 25.0 90 > th dose dependent rect. 19 20
131 320.05 temperature 25.0 270 > th dose dependent sin 7 NA
132 320.06 atmosphere 995.0 270 > th dose dependent rect. 14 18
178 321.01 radiation 20.0 90 < th dose independent rect. 15 20
181 321.06 precipitation 0.1 270 < th dose independent rect. 9 17
182 321.06 precipitation 0.1 270 < th dose dependent rect. 9 17
229 321.69 atmosphere 1000.0 10 > th dose independent rect. 5 15
240 321.85 radiation 20.0 270 < th dose independent rect. 13 20
266 322.30 radiation 1.0 270 > th dose dependent rect. 6 8
272 322.45 wind 7.0 270 < th dose independent rect. 8 7
274 322.47 radiation 1.0 270 > th dose dependent rect. 17 21
278 322.54 temperature 25.0 90 > th dose dependent sin 4 NA
328 323.01 temperature 25.0 10 > th dose dependent rect. 20 20
362 323.47 humidity 90.0 4320 > th dose independent rect. 5 13
364 323.48 temperature 25.0 270 > th dose independent rect. 8 5
366 323.48 temperature 10.0 90 > th dose dependent rect. 9 18
380 323.62 temperature 25.0 10 > th dose dependent rect. 3 13
386 323.69 humidity 90.0 4320 > th dose independent sin 2 NA
387 323.70 humidity 90.0 4320 > th dose independent rect. 4 15
395 323.77 radiation 1.0 270 > th dose dependent sin 4 NA
402 323.82 temperature 25.0 10 > th dose dependent rect. 24 16
418 323.95 humidity 90.0 4320 < th dose independent rect. 5 10
451 324.36 wind 9.0 270 < th dose independent rect. 9 17
460 324.49 humidity 90.0 4320 > th dose independent rect. 1 18
473 324.61 temperature 25.0 270 > th dose independent rect. 24 14
486 324.71 radiation 40.0 90 < th dose dependent rect. 3 22
496 324.79 temperature 10.0 270 > th dose dependent rect. 22 15
531 324.98 humidity 90.0 4320 > th dose independent rect. 1 9
545 325.08 atmosphere 1000.0 90 > th dose independent rect. 17 16
546 325.09 temperature 30.0 90 < th dose independent rect. 3 8
554 325.15 radiation 30.0 90 < th dose independent rect. 17 18
575 325.24 humidity 90.0 4320 > th dose independent rect. 1 13
577 325.28 radiation 40.0 270 < th dose dependent rect. 3 14
579 325.29 wind 7.0 270 < th dose independent rect. 22 15
587 325.39 wind 9.0 270 < th dose dependent rect. 8 7
595 325.46 radiation 40.0 270 < th dose dependent rect. 1 22
610 325.61 radiation 40.0 270 < th dose dependent sin 5 NA
647 325.83 precipitation 0.1 90 < th dose independent rect. 11 16
648 325.83 precipitation 0.1 90 < th dose dependent rect. 11 16
666 325.98 atmosphere 995.0 10 > th dose dependent rect. 16 18
677 326.04 wind 9.0 270 < th dose dependent rect. 9 5
687 326.09 humidity 80.0 270 > th dose dependent rect. 1 21
742 326.40 humidity 90.0 270 < th dose independent rect. 23 15
767 326.56 radiation 10.0 270 > th dose independent rect. 8 6
769 326.57 atmosphere 1000.0 10 > th dose independent rect. 16 18
775 326.58 atmosphere 1015.0 90 < th dose dependent rect. 23 16
781 326.60 wind 9.0 270 < th dose independent rect. 2 7
782 326.60 temperature 10.0 270 > th dose independent rect. 2 7
784 326.60 humidity 50.0 270 > th dose independent rect. 2 7
786 326.60 atmosphere 1015.0 270 < th dose independent rect. 2 7
787 326.60 temperature 10.0 270 > th dose independent rect. 9 17
809 326.72 humidity 50.0 270 > th dose independent rect. 8 7
924 327.12 atmosphere 1015.0 270 < th dose dependent rect. 8 6
937 327.18 radiation 20.0 90 < th dose independent rect. 3 22
956 327.29 humidity 90.0 270 < th dose independent rect. 8 6
964 327.32 wind 1.0 270 > th dose independent rect. 8 7