Os01g0128200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nuclease I.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0128200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Nuclease I.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 243.45 | 0.733 | 8.2 | -1.06 | 1.97 | 2.02 | -2.98 | 2.02 | -0.751 | 16.7 | 1003 | 25745 | -- | -- |
| 242.11 | 0.725 | 8.07 | -0.35 | 2 | 2.01 | -2.91 | -- | -0.337 | 16.7 | 1009 | 24893 | -- | -- |
| 261.4 | 0.753 | 8.12 | -0.746 | 1.95 | 1.95 | -- | 1.17 | -0.434 | 16.7 | 1009 | 24956 | -- | -- |
| 263.82 | 0.756 | 8.07 | -0.377 | 1.95 | 2 | -- | -- | -0.331 | 16.7 | 1009 | 25054 | -- | -- |
| 459.88 | 0.999 | 8.11 | -0.906 | -- | 1.97 | -- | 1.5 | -0.535 | -- | 1008 | 23869 | -- | -- |
| 346.71 | 0.873 | 8.17 | -1.37 | 2.02 | -- | -2.84 | -- | -0.795 | 16.7 | -- | -- | -- | -- |
| 367.9 | 0.898 | 8.18 | -1.38 | 2 | -- | -- | -- | -0.81 | 16.7 | -- | -- | -- | -- |
| 464.61 | 1 | 8.06 | -0.431 | -- | 1.98 | -- | -- | -0.417 | -- | 1008 | 24185 | -- | -- |
| 266.95 | 0.761 | 8.05 | -- | 1.95 | 2.14 | -- | -- | -0.268 | 16.7 | 1009 | 25117 | -- | -- |
| 581.04 | 1.13 | 8.16 | -1.46 | -- | -- | -- | -- | -0.862 | -- | -- | -- | -- | -- |
| 418.45 | 0.957 | 8.14 | -- | 2.03 | -- | -- | -- | -0.656 | 16.7 | -- | -- | -- | -- |
| 468.68 | 1.01 | 8.04 | -- | -- | 2.15 | -- | -- | -0.356 | -- | 1008 | 24230 | -- | -- |
| 637.36 | 1.18 | 8.12 | -- | -- | -- | -- | -- | -0.7 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 239.72 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 2 | 240.44 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 3 | 240.65 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 6 | 240.70 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 14 | 241.14 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 18 | 241.41 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 26 | 241.76 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 28 | 241.79 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 8 | 4 |
| 33 | 241.96 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 35 | 242.00 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 36 | 242.01 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 39 | 242.09 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 40 | 242.12 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 49 | 242.22 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 50 | 242.23 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 52 | 242.23 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 15 | 11 |
| 54 | 242.24 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 55 | 242.24 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 56 | 242.24 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 62 | 242.25 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 15 | 15 |
| 70 | 242.31 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 76 | 242.42 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 2 | 7 |
| 102 | 242.82 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 121 | 243.04 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 129 | 243.11 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 7 | 15 |
| 145 | 243.20 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 22 | 11 |
| 169 | 243.36 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 196 | 243.43 | atmosphere | 1010.0 | 14400 | > th | dose independent | sin | 1 | NA |
| 213 | 243.55 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 262 | 243.85 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 0 | NA |
| 279 | 243.90 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 294 | 243.97 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 302 | 244.00 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 327 | 244.10 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 355 | 244.18 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 446 | 244.42 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 515 | 244.59 | atmosphere | 1010.0 | 14400 | > th | dose independent | no | NA | NA |
| 525 | 244.62 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 548 | 244.67 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 555 | 244.69 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 585 | 244.76 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 593 | 244.79 | atmosphere | 1010.0 | 14400 | < th | dose independent | no | NA | NA |
| 608 | 244.84 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 644 | 244.90 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 697 | 245.01 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 714 | 245.05 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 858 | 245.44 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 873 | 245.46 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 876 | 245.47 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 16 | 15 |
| 903 | 245.54 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 919 | 245.58 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 6 |
| 942 | 245.65 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 4 |
| 986 | 245.75 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 15 | 17 |
| 992 | 245.77 | radiation | 1.0 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 993 | 245.78 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 997 | 245.78 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 4 |