BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0635600 Os04g0635600|Os04g0635600
(214 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0635600 Conserved hypothetical protein 351 3e-97
Os04g0635100 Conserved hypothetical protein 111 5e-25
Os04g0635500 Similar to Wound induced protein (Fragment) 101 3e-22
Os04g0635400 Conserved hypothetical protein 84 1e-16
>Os04g0635600 Conserved hypothetical protein
Length = 214
Score = 351 bits (900), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 177/214 (82%), Positives = 177/214 (82%)
Query: 1 MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLPXXXXX 60
MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLP
Sbjct: 1 MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLPASAAA 60
Query: 61 XXXXXXXXXXXXXXXTVISLKVLLKQLKVIRHAWILEESDVQSGTIAQDRRLLLVLPANA 120
TVISLKVLLKQLKVIRHAWILEESDVQSGTIAQDRRLLLVLPANA
Sbjct: 61 VAERRRAEKAEEGLRTVISLKVLLKQLKVIRHAWILEESDVQSGTIAQDRRLLLVLPANA 120
Query: 121 GSREHWRVQKVRSCISLIYGATFSCRLCQLSRASEYSLASHNTGDPLTCSYLVPSYGTAF 180
GSREHWRVQKVRSCISLIYGATFSCRLCQLSRASEYSLASHNTGDPLTCSYLVPSYGTAF
Sbjct: 121 GSREHWRVQKVRSCISLIYGATFSCRLCQLSRASEYSLASHNTGDPLTCSYLVPSYGTAF 180
Query: 181 GIKGCDRYCXXXXXXXXXXXKMXXXXXXEKQPQP 214
GIKGCDRYC KM EKQPQP
Sbjct: 181 GIKGCDRYCLLLQQLWLQELKMAAAAAAEKQPQP 214
>Os04g0635100 Conserved hypothetical protein
Length = 86
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLP 55
MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLP
Sbjct: 1 MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLP 55
>Os04g0635500 Similar to Wound induced protein (Fragment)
Length = 87
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/56 (92%), Positives = 54/56 (96%), Gaps = 1/56 (1%)
Query: 1 MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANA-AGVSQGKKLP 55
MAGAAKASWMVAMSVGAVEALKDQ GLCRWNYALRSIH+AAKANA AGVS+GKKLP
Sbjct: 1 MAGAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSIHRAAKANARAGVSRGKKLP 56
>Os04g0635400 Conserved hypothetical protein
Length = 95
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 3 GAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANA 45
G ++ASWMVAMSVGAVEALKDQGGLCRWNYALRS HKAAKANA
Sbjct: 27 GCSEASWMVAMSVGAVEALKDQGGLCRWNYALRSXHKAAKANA 69
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.131 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,702,965
Number of extensions: 176650
Number of successful extensions: 326
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 5
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)