Os04g0635400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0635400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 686.07 | 1.22 | 11.5 | -1.58 | 5.9 | -4.24 | -1.48 | 3.42 | -0.0978 | 3.12 | 30 | 10 | 22 | 20 |
| 697.17 | 1.24 | 11.4 | -0.854 | 5.8 | -4.27 | -0.299 | -- | 0.248 | 3.44 | 35.53 | 9 | 22.4 | 20.3 |
| 692 | 1.23 | 11.5 | -1.16 | 5.82 | -4.23 | -- | 2.02 | 0.147 | 3.35 | 33.76 | 8 | 22.4 | 20.3 |
| 674.84 | 1.21 | 11.4 | -0.794 | 5.63 | -4.07 | -- | -- | 0.292 | 3.43 | 39.13 | 14 | 21.9 | 20.8 |
| 765.78 | 1.29 | 11.6 | -1.82 | -- | -7.45 | -- | 1.32 | -0.349 | -- | 144 | 2413 | 20.9 | 20.1 |
| 1004.56 | 1.49 | 11.3 | -0.158 | 4.41 | -- | -0.848 | -- | 0.828 | 2.77 | -- | -- | -- | -- |
| 1007.04 | 1.49 | 11.3 | -0.138 | 4.41 | -- | -- | -- | 0.833 | 2.77 | -- | -- | -- | -- |
| 758.82 | 1.28 | 11.6 | -1.28 | -- | -7.17 | -- | -- | 0.0552 | -- | 179.7 | 2425 | 20.7 | 20.4 |
| 677.94 | 1.21 | 11.4 | -- | 5.89 | -4.92 | -- | -- | 0.307 | 3.44 | 39.82 | 13 | 21.9 | 21 |
| 2135.98 | 2.16 | 11.3 | 0.0504 | -- | -- | -- | -- | 0.946 | -- | -- | -- | -- | -- |
| 1007.54 | 1.48 | 11.3 | -- | 4.41 | -- | -- | -- | 0.849 | 2.77 | -- | -- | -- | -- |
| 789.37 | 1.31 | 11.4 | -- | -- | -6.48 | -- | -- | 0.39 | -- | 223 | 2418 | 20.5 | 20.7 |
| 2136.04 | 2.16 | 11.3 | -- | -- | -- | -- | -- | 0.94 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 689.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 20 |
| 2 | 693.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 21 |
| 5 | 700.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 35 | 720.49 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 19 |
| 39 | 725.29 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 22 |
| 43 | 727.19 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 14 |
| 44 | 727.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 48 | 728.22 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 10 |
| 64 | 733.16 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 15 |
| 66 | 733.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 13 |
| 89 | 737.37 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 106 | 739.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 19 |
| 114 | 740.59 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 19 |
| 116 | 740.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 5 |
| 131 | 742.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 3 |
| 134 | 743.23 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 21 |
| 163 | 745.45 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 21 |
| 164 | 745.46 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 21 |
| 225 | 751.26 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 19 |
| 247 | 752.25 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 6 |
| 255 | 752.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 10 |
| 279 | 753.58 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 323 | 755.25 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 346 | 756.37 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 365 | 757.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 404 | 758.51 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 22 |
| 407 | 758.64 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 425 | 759.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 436 | 759.96 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 453 | 760.40 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 469 | 760.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 471 | 760.92 | temperature | 25 | 1440 | < th | dose dependent | sin | 6 | NA |
| 478 | 761.09 | radiation | 10 | 4320 | < th | dose dependent | rect. | 22 | 7 |
| 480 | 761.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 574 | 764.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 762 | 769.31 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 820 | 770.15 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 903 | 771.66 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 906 | 771.68 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 963 | 772.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 19 | 18 |
| 975 | 772.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 979 | 772.81 | humidity | 60 | 43200 | < th | dose independent | rect. | 17 | 6 |