BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0635400 Os04g0635400|009-097-A05
         (95 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10265.1  | chr4:6373226-6373477 REVERSE LENGTH=84              53   3e-08
AT4G10270.1  | chr4:6374805-6375077 FORWARD LENGTH=91              53   4e-08

>AT4G10265.1 | chr4:6373226-6373477 REVERSE LENGTH=84
          Length = 83

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 25/28 (89%)

Query: 32 SWMVAMSVGAVEALKDQGGLCRWNYALR 59
          +WMVA S+GAVEALKDQ G+CRWNY +R
Sbjct: 7  TWMVAASIGAVEALKDQLGVCRWNYVIR 34



>AT4G10270.1 | chr4:6374805-6375077 FORWARD LENGTH=91
          Length = 90

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/28 (78%), Positives = 25/28 (89%)

Query: 32 SWMVAMSVGAVEALKDQGGLCRWNYALR 59
          +W VA+S+GAVEALKDQ GLCRWNY LR
Sbjct: 7  AWTVAVSIGAVEALKDQLGLCRWNYILR 34



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.127    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,478,683
Number of extensions: 37346
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 95
Length of database: 11,106,569
Length adjustment: 65
Effective length of query: 30
Effective length of database: 9,324,529
Effective search space: 279735870
Effective search space used: 279735870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 105 (45.1 bits)