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Os04g0635600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.76 (0.0813) R2 : 0.667
β1 : -1.02 (0.298) R2dD : 0.00936 R2D : -0.00355
β2 : 1.37 (0.213) R2dC : 0.0297 R2C : 0.0416
β3 : 6.13 (0.211) R2dE : 0.609 R2E : 0.615
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.748 (0.174) R2dN8 : 0.0196 R2N8 : 0.00669
σ : 1.52
deviance : 1064.73
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_____
C
peak time of C : 5.99
E
wheather : humidity
threshold : 44.99
memory length : 653
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.2
open length of G : 1.35

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1084.88 1.55 8.77 -0.956 1.57 5.88 -3.03 -0.827 -0.72 4.83 47.17 677 17.2 2.8
1068.11 1.52 8.77 -0.84 1.24 5.76 -3.52 -- -0.795 4.19 48.75 668 17.7 2.3
1054.21 1.51 8.78 -1.03 1.39 6.21 -- -1.87 -0.768 6.29 45.57 656 18.2 1.24
1064.73 1.52 8.76 -1.02 1.37 6.13 -- -- -0.748 5.99 44.99 653 18.2 1.35
1130.75 1.57 8.75 -1.02 -- 6.19 -- -1.53 -0.6 -- 43.75 658 18.3 1.43
1494.83 1.81 8.85 -0.941 5.17 -- -1.96 -- -0.748 1.33 -- -- -- --
1510.46 1.82 8.84 -0.873 5.17 -- -- -- -0.736 1.3 -- -- -- --
1138.16 1.57 8.77 -1.02 -- 5.96 -- -- -0.655 -- 38.52 658 18.2 1.48
1085.4 1.53 8.75 -- 1.52 6.33 -- -- -0.646 7.04 39.03 668 17.8 1.54
3157.41 2.63 8.77 -0.671 -- -- -- -- -0.629 -- -- -- -- --
1530.54 1.83 8.82 -- 5.15 -- -- -- -0.639 1.29 -- -- -- --
1161.3 1.59 8.75 -- -- 5.94 -- -- -0.577 -- 37.06 675 17.9 2.12
3169.3 2.63 8.75 -- -- -- -- -- -0.555 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1130.90 humidity 50.0 720 > th dose dependent rect. 17 3
2 1135.25 radiation 10.0 720 < th dose independent rect. 16 4
4 1142.90 temperature 20.0 90 > th dose independent rect. 18 10
6 1156.90 radiation 10.0 720 < th dose dependent rect. 16 4
9 1163.80 humidity 60.0 720 > th dose independent rect. 17 3
10 1164.71 radiation 10.0 720 < th dose independent rect. 16 13
13 1167.85 atmosphere 1010.0 90 < th dose independent rect. 18 10
17 1170.99 radiation 10.0 720 < th dose dependent rect. 17 2
20 1174.24 temperature 20.0 90 > th dose independent rect. 18 20
21 1174.27 temperature 30.0 720 < th dose independent rect. 17 3
23 1175.04 radiation 40.0 720 < th dose dependent rect. 15 14
28 1177.25 radiation 10.0 720 < th dose independent rect. 16 11
29 1178.58 radiation 10.0 10 < th dose dependent rect. 19 16
36 1182.79 radiation 10.0 720 < th dose dependent rect. 17 10
42 1186.13 radiation 1.0 90 < th dose independent rect. 18 19
44 1186.56 atmosphere 1010.0 10 < th dose independent rect. 19 10
48 1187.34 radiation 1.0 90 < th dose independent rect. 18 16
67 1194.16 radiation 1.0 30 < th dose dependent rect. 18 20
78 1196.64 temperature 30.0 10 < th dose independent rect. 18 11
91 1198.59 humidity 60.0 720 > th dose independent rect. 17 11
102 1200.24 radiation 1.0 90 < th dose independent rect. 5 23
111 1202.20 atmosphere 1010.0 90 < th dose independent rect. 18 20
114 1203.21 temperature 10.0 90 > th dose dependent rect. 18 10
118 1204.10 humidity 60.0 720 > th dose independent rect. 17 18
122 1204.44 humidity 70.0 720 > th dose independent rect. 16 13
135 1206.12 radiation 1.0 90 < th dose dependent rect. 5 23
137 1206.16 precipitation 0.1 90 < th dose independent rect. 5 13
138 1206.16 precipitation 0.1 90 < th dose dependent rect. 5 13
139 1206.29 temperature 10.0 10 > th dose dependent rect. 19 10
163 1208.33 radiation 1.0 30 < th dose dependent sin 14 NA
174 1210.30 radiation 1.0 90 < th dose independent sin 15 NA
181 1211.36 radiation 1.0 90 < th dose independent rect. 18 11
182 1211.40 temperature 30.0 720 < th dose independent rect. 17 11
191 1213.00 humidity 60.0 90 > th dose independent rect. 18 11
295 1223.71 temperature 10.0 90 > th dose independent rect. 5 13
296 1223.71 atmosphere 1015.0 90 < th dose independent rect. 5 13
303 1224.15 atmosphere 995.0 90 > th dose independent rect. 18 11
311 1224.81 humidity 70.0 1440 > th dose independent rect. 17 21
318 1225.21 wind 7.0 270 < th dose independent rect. 20 11
339 1226.23 wind 9.0 90 < th dose independent rect. 18 11
340 1226.25 humidity 80.0 1440 < th dose dependent rect. 18 19
347 1226.53 precipitation 0.1 10 < th dose independent rect. 5 14
348 1226.53 precipitation 0.1 10 < th dose dependent rect. 5 14
351 1226.60 precipitation 0.1 270 < th dose independent rect. 20 22
352 1226.60 precipitation 0.1 270 < th dose dependent rect. 20 22
354 1226.83 radiation 1.0 90 > th dose independent sin 15 NA
361 1227.37 humidity 50.0 720 > th dose dependent rect. 17 11
367 1227.90 radiation 1.0 90 < th dose dependent rect. 13 23
375 1228.25 radiation 1.0 90 < th dose dependent rect. 13 21
384 1228.76 radiation 1.0 90 < th dose dependent rect. 11 23
385 1228.90 radiation 1.0 90 < th dose dependent no NA NA
391 1229.02 radiation 1.0 90 < th dose dependent rect. 9 23
393 1229.27 precipitation 0.1 270 < th dose independent rect. 20 11
394 1229.27 precipitation 0.1 270 < th dose dependent rect. 20 11
423 1230.48 radiation 1.0 10 < th dose independent rect. 19 11
426 1230.66 humidity 80.0 1440 < th dose dependent sin 8 NA
440 1231.92 humidity 70.0 1440 < th dose independent rect. 17 21
448 1232.63 radiation 10.0 720 < th dose independent sin 14 NA
461 1233.70 radiation 1.0 720 > th dose dependent rect. 14 18
463 1233.97 humidity 50.0 30 > th dose dependent rect. 18 20
470 1234.31 temperature 10.0 90 > th dose dependent rect. 18 20
478 1234.62 radiation 40.0 30 < th dose dependent rect. 19 19
481 1234.77 radiation 40.0 90 < th dose dependent rect. 18 21
491 1234.97 atmosphere 995.0 10 > th dose independent rect. 19 10
497 1234.97 temperature 10.0 10 > th dose independent rect. 5 14
499 1234.97 atmosphere 1015.0 10 < th dose independent rect. 5 14
501 1235.01 radiation 10.0 720 < th dose dependent sin 13 NA
519 1236.58 precipitation 0.1 720 < th dose independent rect. 13 19
520 1236.58 precipitation 0.1 720 < th dose dependent rect. 13 19
530 1236.92 temperature 20.0 270 > th dose independent rect. 16 21
542 1237.60 wind 9.0 10 < th dose independent rect. 19 10
553 1238.41 radiation 10.0 720 < th dose dependent rect. 24 20
597 1240.64 wind 9.0 90 < th dose independent rect. 4 14
652 1242.20 radiation 1.0 90 < th dose independent rect. 13 23
668 1242.61 radiation 1.0 90 < th dose independent rect. 13 21
681 1243.42 radiation 1.0 90 < th dose independent rect. 11 23
683 1243.51 atmosphere 995.0 90 > th dose dependent rect. 14 4
684 1243.56 radiation 1.0 90 < th dose independent no NA NA
692 1243.69 radiation 1.0 90 < th dose independent rect. 9 23
695 1243.82 radiation 1.0 90 > th dose independent no NA NA
696 1243.82 radiation 1.0 90 > th dose independent rect. 4 15
765 1244.76 wind 9.0 10 < th dose independent rect. 5 14
770 1244.97 temperature 20.0 90 > th dose independent rect. 18 17
794 1245.59 radiation 1.0 90 < th dose dependent rect. 13 15
796 1245.73 radiation 1.0 90 < th dose dependent rect. 11 17
814 1246.05 atmosphere 995.0 270 > th dose dependent rect. 14 1
822 1246.45 radiation 1.0 90 > th dose independent rect. 15 15
856 1247.05 radiation 1.0 90 > th dose independent rect. 9 23
917 1249.09 humidity 70.0 1440 > th dose independent sin 9 NA
921 1249.22 humidity 70.0 1440 < th dose independent rect. 6 8
939 1249.39 atmosphere 1010.0 270 < th dose independent rect. 18 2
951 1250.01 humidity 80.0 1440 < th dose dependent no NA NA
953 1250.09 humidity 80.0 1440 < th dose dependent rect. 23 23
957 1250.18 humidity 80.0 1440 < th dose dependent rect. 5 23
973 1250.50 humidity 80.0 1440 < th dose dependent rect. 1 23
977 1250.63 precipitation 0.1 90 < th dose independent rect. 15 3
979 1250.63 precipitation 0.1 90 < th dose dependent rect. 15 3