BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0635600 Os04g0635600|Os04g0635600
         (214 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G10270.1  | chr4:6374805-6375077 FORWARD LENGTH=91              67   6e-12
AT4G10265.1  | chr4:6373226-6373477 REVERSE LENGTH=84              66   1e-11
AT4G33560.1  | chr4:16135465-16135752 FORWARD LENGTH=96            48   3e-06

>AT4G10270.1 | chr4:6374805-6375077 FORWARD LENGTH=91
          Length = 90

 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%), Gaps = 1/54 (1%)

Query: 1  MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKL 54
          M+  +KA W VA+S+GAVEALKDQ GLCRWNY LRS+++  + N   VSQGK+ 
Sbjct: 1  MSSTSKA-WTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRF 53



>AT4G10265.1 | chr4:6373226-6373477 REVERSE LENGTH=84
          Length = 83

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%), Gaps = 1/54 (1%)

Query: 1  MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKL 54
          M+ A+K +WMVA S+GAVEALKDQ G+CRWNY +RS ++  + N   VSQ KKL
Sbjct: 1  MSSASK-TWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKL 53



>AT4G33560.1 | chr4:16135465-16135752 FORWARD LENGTH=96
          Length = 95

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 1  MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVS 49
          M    +ASW VA ++ AVE LKDQ G+ RWNY  R +HK A A    ++
Sbjct: 1  MNAGKQASWAVATAIAAVEVLKDQ-GVARWNYLFRLLHKEAMARVRTIT 48



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.131    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,546,153
Number of extensions: 110900
Number of successful extensions: 223
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 3
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)