BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0635500 Os04g0635500|AK069933
(87 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0635500 Similar to Wound induced protein (Fragment) 128 1e-30
Os04g0635100 Conserved hypothetical protein 112 6e-26
Os04g0635600 Conserved hypothetical protein 101 1e-22
Os04g0635400 Conserved hypothetical protein 79 7e-16
>Os04g0635500 Similar to Wound induced protein (Fragment)
Length = 87
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 67/87 (77%)
Query: 1 MAGAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSIHRAAKANARAGVSRGKKLPXXXX 60
MAGAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSIHRAAKANARAGVSRGKKLP
Sbjct: 1 MAGAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSIHRAAKANARAGVSRGKKLPASAA 60
Query: 61 XXXXXXXXXXXXXXXXTVMYISCWSTN 87
TVMYISCWSTN
Sbjct: 61 AVAERRRAEKAEEGLRTVMYISCWSTN 87
>Os04g0635100 Conserved hypothetical protein
Length = 86
Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 1 MAGAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSIHRAAKANARAGVSRGKKLPXXXX 60
MAGAAKASWMVAMSVGAVEALKDQ GLCRWNYALRSIH+AAKANA AGVS+GKKLP
Sbjct: 1 MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANA-AGVSQGKKLPASAA 59
Query: 61 XXXXXXXXXXXXXXXXTVMYISCWSTN 87
TVMY+SCW N
Sbjct: 60 AVAERRRAEKAEEGLRTVMYLSCWGPN 86
>Os04g0635600 Conserved hypothetical protein
Length = 214
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/56 (92%), Positives = 54/56 (96%), Gaps = 1/56 (1%)
Query: 1 MAGAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSIHRAAKANARAGVSRGKKLP 56
MAGAAKASWMVAMSVGAVEALKDQ GLCRWNYALRSIH+AAKANA AGVS+GKKLP
Sbjct: 1 MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANA-AGVSQGKKLP 55
>Os04g0635400 Conserved hypothetical protein
Length = 95
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/43 (86%), Positives = 40/43 (93%)
Query: 3 GAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSIHRAAKANA 45
G ++ASWMVAMSVGAVEALKDQ GLCRWNYALRS H+AAKANA
Sbjct: 27 GCSEASWMVAMSVGAVEALKDQGGLCRWNYALRSXHKAAKANA 69
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.124 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,909,859
Number of extensions: 39793
Number of successful extensions: 112
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 6
Length of query: 87
Length of database: 17,035,801
Length adjustment: 57
Effective length of query: 30
Effective length of database: 14,059,603
Effective search space: 421788090
Effective search space used: 421788090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)