BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0635100 Os04g0635100|009-164-B01
(86 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0635100 Conserved hypothetical protein 126 3e-30
Os04g0635500 Similar to Wound induced protein (Fragment) 112 6e-26
Os04g0635600 Conserved hypothetical protein 110 2e-25
Os04g0635400 Conserved hypothetical protein 82 7e-17
>Os04g0635100 Conserved hypothetical protein
Length = 86
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/86 (76%), Positives = 66/86 (76%)
Query: 1 MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLPXXXXX 60
MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLP
Sbjct: 1 MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLPASAAA 60
Query: 61 XXXXXXXXXXXXXXXTVMYLSCWGPN 86
TVMYLSCWGPN
Sbjct: 61 VAERRRAEKAEEGLRTVMYLSCWGPN 86
>Os04g0635500 Similar to Wound induced protein (Fragment)
Length = 87
Score = 112 bits (280), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 63/87 (72%), Gaps = 1/87 (1%)
Query: 1 MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANA-AGVSQGKKLPXXXX 59
MAGAAKASWMVAMSVGAVEALKDQ GLCRWNYALRSIH+AAKANA AGVS+GKKLP
Sbjct: 1 MAGAAKASWMVAMSVGAVEALKDQAGLCRWNYALRSIHRAAKANARAGVSRGKKLPASAA 60
Query: 60 XXXXXXXXXXXXXXXXTVMYLSCWGPN 86
TVMY+SCW N
Sbjct: 61 AVAERRRAEKAEEGLRTVMYISCWSTN 87
>Os04g0635600 Conserved hypothetical protein
Length = 214
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLP 55
MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLP
Sbjct: 1 MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLP 55
>Os04g0635400 Conserved hypothetical protein
Length = 95
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 3 GAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANA 45
G ++ASWMVAMSVGAVEALKDQGGLCRWNYALRS HKAAKANA
Sbjct: 27 GCSEASWMVAMSVGAVEALKDQGGLCRWNYALRSXHKAAKANA 69
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.126 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,990,486
Number of extensions: 41948
Number of successful extensions: 105
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 6
Length of query: 86
Length of database: 17,035,801
Length adjustment: 56
Effective length of query: 30
Effective length of database: 14,111,817
Effective search space: 423354510
Effective search space used: 423354510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)