BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0603000 Os04g0603000|J075143D15
         (92 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0603000  Aldose 1-epimerase family protein                   194   1e-50
AK070482                                                          155   7e-39
Os04g0658000  Similar to Possible apospory-associated like p...   121   1e-28
Os01g0658700  Aldose 1-epimerase family protein                   103   2e-23
Os02g0176900  Aldose 1-epimerase family protein                    65   1e-11

>Os04g0603000 Aldose 1-epimerase family protein
          Length = 92

 Score =  194 bits (493), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  IFVSSCIKHQFLPVSVHTFACVVLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITL 60
          IFVSSCIKHQFLPVSVHTFACVVLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITL
Sbjct: 1  IFVSSCIKHQFLPVSVHTFACVVLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITL 60

Query: 61 KPGEEWKGKMDLSAVPSSYCSGQLDPNKVLQG 92
          KPGEEWKGKMDLSAVPSSYCSGQLDPNKVLQG
Sbjct: 61 KPGEEWKGKMDLSAVPSSYCSGQLDPNKVLQG 92



>AK070482 
          Length = 330

 Score =  155 bits (391), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 23  VLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITLKPGEEWKGKMDLSAVPSSYCSG 82
           VLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITLKPGEEWKGKMDLSAVPSSYCSG
Sbjct: 261 VLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITLKPGEEWKGKMDLSAVPSSYCSG 320

Query: 83  QLDPNKVLQG 92
           QLDPNKVLQG
Sbjct: 321 QLDPNKVLQG 330



>Os04g0658000 Similar to Possible apospory-associated like protein
          Length = 344

 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 62/70 (88%)

Query: 22  VVLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITLKPGEEWKGKMDLSAVPSSYCS 81
            V+WNPWDK+ K M DFGD+EYK M+CVE AA+EKPITLKPGEEW GK++LSAVPSSY S
Sbjct: 265 AVVWNPWDKKAKAMSDFGDDEYKRMVCVEAAAIEKPITLKPGEEWTGKLELSAVPSSYYS 324

Query: 82  GQLDPNKVLQ 91
           GQLDP++VLQ
Sbjct: 325 GQLDPDRVLQ 334



>Os01g0658700 Aldose 1-epimerase family protein
          Length = 314

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/64 (71%), Positives = 54/64 (84%)

Query: 22  VVLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITLKPGEEWKGKMDLSAVPSSYCS 81
           VV+WNPWDK++K M DFGDEEYK MLCV+ AAVE+ ITLKPGEEW GK++LSAV S+ CS
Sbjct: 247 VVVWNPWDKKSKTMADFGDEEYKQMLCVDAAAVERAITLKPGEEWTGKLELSAVASTNCS 306

Query: 82  GQLD 85
             LD
Sbjct: 307 DHLD 310



>Os02g0176900 Aldose 1-epimerase family protein
          Length = 304

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 33/42 (78%)

Query: 22  VVLWNPWDKRTKNMQDFGDEEYKHMLCVEPAAVEKPITLKPG 63
           VV+WNPWD++ K + DFG+EEYK MLCV  A  EKPITL+P 
Sbjct: 243 VVVWNPWDRKAKTILDFGEEEYKCMLCVGAANAEKPITLRPA 284



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,611,834
Number of extensions: 135232
Number of successful extensions: 265
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 5
Length of query: 92
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 31
Effective length of database: 13,850,747
Effective search space: 429373157
Effective search space used: 429373157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)