BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0565500 Os04g0565500|AK058888
(395 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0565500 Amino acid/polyamine transporter II family pro... 655 0.0
Os02g0670900 Similar to Amino acid transporter protein-like 471 e-133
Os03g0817200 Amino acid/polyamine transporter II family pro... 187 9e-48
Os07g0231400 Amino acid/polyamine transporter II family pro... 154 1e-37
Os04g0460300 Amino acid/polyamine transporter II family pro... 77 2e-14
>Os04g0565500 Amino acid/polyamine transporter II family protein
Length = 395
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/395 (84%), Positives = 333/395 (84%)
Query: 1 MGLHKEASSSSSRLDXXXXXXXXXXXXXXXXXXXSSQPKTFANVFIAVVGSGVLGLPYTF 60
MGLHKEASSSSSRLD SSQPKTFANVFIAVVGSGVLGLPYTF
Sbjct: 1 MGLHKEASSSSSRLDAAPLLPHHGHGGGGAGHHLSSQPKTFANVFIAVVGSGVLGLPYTF 60
Query: 61 SRTGWXXXXXXXXXXXXXTFHCMMLLVACRRRLAYDHPKIASFGDLGAAVCGPAGRHVVD 120
SRTGW TFHCMMLLVACRRRLAYDHPKIASFGDLGAAVCGPAGRHVVD
Sbjct: 61 SRTGWVAGSVLLLAVAALTFHCMMLLVACRRRLAYDHPKIASFGDLGAAVCGPAGRHVVD 120
Query: 121 AMLVLSQASFCVGYLIFISNTMAHLYPVGDSSPSSPLLTAKAIFIWVMLPFQLGLNSIKT 180
AMLVLSQASFCVGYLIFISNTMAHLYPVGDSSPSSPLLTAKAIFIWVMLPFQLGLNSIKT
Sbjct: 121 AMLVLSQASFCVGYLIFISNTMAHLYPVGDSSPSSPLLTAKAIFIWVMLPFQLGLNSIKT 180
Query: 181 LTLLAPLSIFAGPTEILYGLGVAVYAFEGIGMVLPLEAEAADKRKFGGTLALSMAFIAVM 240
LTLLAPLSIFAGPTEILYGLGVAVYAFEGIGMVLPLEAEAADKRKFGGTLALSMAFIAVM
Sbjct: 181 LTLLAPLSIFAGPTEILYGLGVAVYAFEGIGMVLPLEAEAADKRKFGGTLALSMAFIAVM 240
Query: 241 YGLFGAMGYLAFGAATRDIITTNLGTGWLSVTVQLGLCINLFFTMPVMMNPVYEVAERLL 300
YGLFGAMGYLAFGAATRDIITTNLGTGWLSVTVQLGLCINLFFTMPVMMNPVYEVAERLL
Sbjct: 241 YGLFGAMGYLAFGAATRDIITTNLGTGWLSVTVQLGLCINLFFTMPVMMNPVYEVAERLL 300
Query: 301 CRKRYAWWLRWXXXXXXXXXXXXXPNFADXXXXXXXXXXXXXXXXXPAAFHLKVFGAEVG 360
CRKRYAWWLRW PNFAD PAAFHLKVFGAEVG
Sbjct: 301 CRKRYAWWLRWLLVMVVGLMAMLVPNFADFLSLVGSSVCVLLGFVLPAAFHLKVFGAEVG 360
Query: 361 WPGLAGDVAVIVVGTALAVSGTWTSLAQIFSSSDV 395
WPGLAGDVAVIVVGTALAVSGTWTSLAQIFSSSDV
Sbjct: 361 WPGLAGDVAVIVVGTALAVSGTWTSLAQIFSSSDV 395
>Os02g0670900 Similar to Amino acid transporter protein-like
Length = 422
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 269/424 (63%), Positives = 291/424 (68%), Gaps = 33/424 (7%)
Query: 1 MGLHKEASSSSSRLDXXXXXXXXXXXXXXXXXXXSSQPKTFANVFIAVVGSGVLGLPYTF 60
MGL EASSSSSRL SSQPKTFANVFIAVVG+GVLGLPYTF
Sbjct: 1 MGLGNEASSSSSRL--LDPAPLLPHHGGDGAGKLSSQPKTFANVFIAVVGAGVLGLPYTF 58
Query: 61 SRTGWXXXXXXXXXXXXXTFHCMMLLVACRRRLAYDHPKIASFGDLGAAVCGPAGRHVVD 120
SRTGW TF+CMMLLVACRRRLA +HPKIASFGDLG AV GR VD
Sbjct: 59 SRTGWAAGSILLLSVAALTFYCMMLLVACRRRLADEHPKIASFGDLGDAVFRGPGRLAVD 118
Query: 121 AMLVLSQASFCVGYLIFISNTMAHLYPVGDSSPSSPLLTAKAIFIWVMLPFQLGLNSIKT 180
MLVLSQASFCVGYLIFISNTMAHLYPV S S+ LL+ KA+FIW MLPFQLGLNSIKT
Sbjct: 119 TMLVLSQASFCVGYLIFISNTMAHLYPVFAPS-SNALLSPKALFIWAMLPFQLGLNSIKT 177
Query: 181 LTLLAPLSIFA------------------------------GPTEILYGLGVAVYAFEGI 210
LTLLAPLSIFA G + ILYG+GV+VYAFEGI
Sbjct: 178 LTLLAPLSIFADVVDLGAMGVVLGEDVSVWLAKPPPVFAFGGLSAILYGIGVSVYAFEGI 237
Query: 211 GMVLPLEAEAADKRKFGGTLALSMAFIAVMYGLFGAMGYLAFGAATRDIITTNLGTGWLS 270
GMVLPLEAEAA+K+KFG TL LSM FIAVMYGLFGAMGY+AFG ATRDIITTNLGTGWLS
Sbjct: 238 GMVLPLEAEAANKKKFGTTLGLSMGFIAVMYGLFGAMGYIAFGDATRDIITTNLGTGWLS 297
Query: 271 VTVQLGLCINLFFTMPVMMNPVYEVAERLLCRKRYAWWLRWXXXXXXXXXXXXXPNFADX 330
VQLGLCINLFFTMPVMM+PVYEVAERLL KRY WWLRW PNF D
Sbjct: 298 AAVQLGLCINLFFTMPVMMHPVYEVAERLLHGKRYCWWLRWLLVLAVGLSAMYVPNFTDF 357
Query: 331 XXXXXXXXXXXXXXXXPAAFHLKVFGAEVGWPGLAGDVAVIVVGTALAVSGTWTSLAQIF 390
PA+FHLKVFGAE+ W G+ DV ++++G +LAV GT+TSL QIF
Sbjct: 358 LALVGSSVCVLLGFVLPASFHLKVFGAEMSWSGVLSDVLLVLLGLSLAVFGTYTSLLQIF 417
Query: 391 SSSD 394
SS
Sbjct: 418 HSSS 421
>Os03g0817200 Amino acid/polyamine transporter II family protein
Length = 418
Score = 187 bits (476), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 122/394 (30%), Positives = 182/394 (46%), Gaps = 48/394 (12%)
Query: 39 KTFANVFIAVVGSGVLGLPYTFSRTGWXXXXXXXXXXXXXTFHCMMLLVACRRRL----A 94
+T N+ +++VG+GVLGLPY F +GW TF+CM+LL+ CR +L
Sbjct: 20 QTLGNIVVSIVGTGVLGLPYAFRTSGWLAGALGVAGAGAATFYCMLLLLDCRDKLREQEE 79
Query: 95 YDHPKIASFGDLGAAVCGPAGRHVVDAMLVLSQASFCVGYLIFISNTMAHLYPVGDSSPS 154
DH ++GDLG G GR+ + ++LSQ V YL+FI + ++P +
Sbjct: 80 VDHDGNYTYGDLGEKCFGAIGRYFTEVTIILSQTGGSVAYLVFIGQNICSVFPTTAAGGE 139
Query: 155 SP--LLTAKAIFIWVMLPFQLGLNSIKTLTLLAPLSIFAGPTEIL--------------- 197
P ++ A+ + V+LP + L+ I++L+ LAP SI A +L
Sbjct: 140 EPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSILADACTVLAVATVVREDVQLLAG 199
Query: 198 -------------------YGLGVAVYAFEGIGMVLPLEAEAADKRKFGGTLALSMAFIA 238
+ GVAV+ FEG + L LEA +D+R+F L ++A +
Sbjct: 200 RGGSPFQGRSALAGLWGVPFACGVAVFCFEGFCLTLALEASMSDRRRFRPVLLHAIAGVT 259
Query: 239 VMYGLFGAMGYLAFGAATRDIITTNLGTGWLSVTVQLGLCINLFFTMPVMMNPVYEVAER 298
+Y FG GYLA+G TRDI+T NL W + V++ LC+ L T PVMM+P++E+ E
Sbjct: 260 AVYVCFGVCGYLAYGDVTRDIVTLNLPNNWSTAAVKIVLCVALALTFPVMMHPIHEIVEA 319
Query: 299 LL-------CRKRYAWWL-RWXXXXXXXXXXXXXPNFADXXXXXXXXXXXXXXXXXPAAF 350
L RKR A R P F + PA F
Sbjct: 320 RLFPSAGGWARKRAAVQASRVAVVGAVTAVACFVPAFGEFAAFVGSTVCALLSFVLPALF 379
Query: 351 HLKVFGAEVGWPGLAGDVAVIVVGTALAVSGTWT 384
HL++ GA A D +++G A A G +T
Sbjct: 380 HLRLVGAAASAWRRAVDGGFLLLGLAFAAHGLYT 413
>Os07g0231400 Amino acid/polyamine transporter II family protein
Length = 349
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 156/346 (45%), Gaps = 58/346 (16%)
Query: 83 MMLLVACRRRLAYDHPKIA-----SFGDLGAAVCGPAGRHVVDAMLVLSQASFCVGYLIF 137
M+LLV CR +L + ++GDLG G GR + + ++++SQA V YLIF
Sbjct: 1 MLLLVDCRDKLEEKESEETYHGHYTYGDLGEKCFGTIGRCLTEILILVSQAGGSVAYLIF 60
Query: 138 ISNTMAHLYPVGDSSPSSPLLTAKAIFIWVMLPFQLGLNSIKTLTLLAPLSIFAGPTEIL 197
I + ++ S L++ A ++LP Q+ L+ I++L+ L+P SIFA +L
Sbjct: 61 IGQNLHSVF--------SQLMSPAAFIFAILLPMQIALSFIRSLSSLSPFSIFADVCNVL 112
Query: 198 ------------------------------YGLGVAVYAFEGIGMVLPLEAEAADKRKFG 227
+ GVAV+ FEG M L LE+ A++RKF
Sbjct: 113 AMAIVIKEDLQLFDHPFANRSAFNGLWAIPFTFGVAVFCFEGFSMTLALESSMAERRKFR 172
Query: 228 GTLALSMAFIAVMYGLFGAMGYLAFGAATRDIITTNLGTGWLSVTVQLGLCINLFFTMPV 287
L+ ++ I ++Y FG GYLA+G AT+DIIT NL W S V++GLCI L FT PV
Sbjct: 173 WVLSQAVVGIIIVYACFGVCGYLAYGEATKDIITLNLPNSWSSAAVKVGLCIALVFTFPV 232
Query: 288 MMNPVYEVAE----------RLLCRKRYAWWL-----RWXXXXXXXXXXXXXPNFADXXX 332
MM+P++E+ E +L + R A W+ R P F
Sbjct: 233 MMHPIHEIVEERFQSSGCFPKLSHKVRGAEWVGLHSSRIVMVTILSVVASFIPAFGSFIS 292
Query: 333 XXXXXXXXXXXXXXPAAFHLKVFGAEVGWPGLAGDVAVIVVGTALA 378
P FHL + G+ + GD ++ G A
Sbjct: 293 FVGSTVCALLSFVLPTIFHLSIVGSSMSPWRRWGDYGFLLFGLGFA 338
>Os04g0460300 Amino acid/polyamine transporter II family protein
Length = 455
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 147/386 (38%), Gaps = 39/386 (10%)
Query: 39 KTFANVFIAVVGSGVLGLPYTFSRTGWXXXXXXXXXXXXXTFHCMMLLVACRRRLAYDHP 98
+T N A+ G G+L +PY S GW + ++L RR P
Sbjct: 72 RTCFNGLNALSGVGLLSIPYALSEGGWLSLVLLLAVAMVCCYTGLLL-----RRCMAASP 126
Query: 99 KIASFGDLGAAVCGPAGRHVVDAMLVLSQASFCVGYLIFISNTMAHLYPVGDSSPSSPLL 158
+ + D+GA G GR V A L +G+LI + + L+P + ++
Sbjct: 127 AVRGYPDIGALAFGAKGRLAVSAFLYAELYLVAIGFLILEGDNLDKLFPGTSLAVGGLVV 186
Query: 159 TAKAIFIWVMLPFQLGLNSIKTLTLLAPLSI-----------------------FAGPTE 195
+ K +F+ V+ L +++L +LA +S F G
Sbjct: 187 SGKQLFVVVVAVVILPTTWLRSLAVLAYVSASGVLASVVVVFCVLWAAVFDGVGFHGKGR 246
Query: 196 ILY------GLGVAVYAFEGIGMVLPLEAEAADKRKFGGTLALSMAFIAVMYGLFGAMGY 249
+L LG+ + + G + L +K KF L + V YG +GY
Sbjct: 247 MLNVSGLPTALGLYTFCYCGHAIFPTLCNSMQEKDKFSRVLVICFVACTVNYGSMAILGY 306
Query: 250 LAFGAATRDIITTNLGTGWLSVTVQL-GLCINLFFTMPVMMNPV-YEVAERLLC--RKRY 305
L +G + +T NL G +S + + IN F +M+ PV + E+LL ++
Sbjct: 307 LMYGDDVKSQVTLNLPEGKISSKLAIYTTLINPFSKYALMVTPVATAIEEKLLAGNKRSV 366
Query: 306 AWWLRWXXXXXXXXXXXXXPNFADXXXXXXXXXXXXXXXXXPAAFHLKVFG-AEVGWPGL 364
+R P F P +LK+FG G
Sbjct: 367 NVLIRTLIVVSTVVIALTVPFFGHLMALVGSLLSVMASMLLPCICYLKIFGLTRCGRGET 426
Query: 365 AGDVAVIVVGTALAVSGTWTSLAQIF 390
A+IV+G+ +A +GT++SL +IF
Sbjct: 427 LLIAAIIVLGSLVAATGTYSSLKKIF 452
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.139 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,533,933
Number of extensions: 365144
Number of successful extensions: 1069
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 6
Length of query: 395
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 292
Effective length of database: 11,657,759
Effective search space: 3404065628
Effective search space used: 3404065628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 157 (65.1 bits)