Os03g0817200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid/polyamine transporter II family protein.
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Os03g0817200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid/polyamine transporter II family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 602.69 | 1.15 | 5.08 | -5.13 | 1.32 | 0.776 | -2.7 | -7.4 | -1.02 | 1.61 | 4.699 | 4473 | 17.1 | 1.45 |
| 620.43 | 1.16 | 5.28 | -4.95 | 1.26 | 2.08 | -3 | -- | -1.04 | 1.32 | 4.413 | 3906 | 17.8 | 1.8 |
| 622.18 | 1.16 | 5.11 | -5.06 | 1.22 | 0.837 | -- | -7.21 | -1.03 | 1.74 | 4.269 | 3745 | 17.2 | 1.79 |
| 639.54 | 1.18 | 5.15 | -5.07 | 1.17 | 2.35 | -- | -- | -0.899 | 1.77 | 4.876 | 2152 | 17.8 | 1.24 |
| 640.08 | 1.18 | 5.27 | -5.12 | -- | 2.35 | -- | -6.44 | -1.3 | -- | 0.9396 | 2235 | 17.4 | 1.97 |
| 703.65 | 1.24 | 5.31 | -5.65 | 1.37 | -- | -3.05 | -- | -1.3 | 1.45 | -- | -- | -- | -- |
| 740.58 | 1.27 | 5.3 | -5.55 | 1.38 | -- | -- | -- | -1.29 | 1.75 | -- | -- | -- | -- |
| 687.99 | 1.22 | 5.19 | -4.41 | -- | 3.32 | -- | -- | -0.897 | -- | 3.939 | 2218 | 17.8 | 1.29 |
| 1095.1 | 1.54 | 5.14 | -- | 0.985 | 4.98 | -- | -- | -0.399 | 3.71 | 4.205 | 3248 | 17.7 | 1.2 |
| 856.17 | 1.37 | 5.28 | -5.5 | -- | -- | -- | -- | -1.26 | -- | -- | -- | -- | -- |
| 1553.02 | 1.84 | 5.16 | -- | 1.28 | -- | -- | -- | -0.669 | 1.62 | -- | -- | -- | -- |
| 935.95 | 1.42 | 5.01 | -- | -- | 5.36 | -- | -- | -0.191 | -- | 6 | 47520 | 16.4 | 2.52 |
| 1652.91 | 1.9 | 5.14 | -- | -- | -- | -- | -- | -0.646 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 604.73 | wind | 7 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 2 | 605.81 | humidity | 80 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 3 | 606.07 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 5 | 606.57 | humidity | 90 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 6 | 606.87 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 12 | 608.04 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 27 | 610.21 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 29 | 610.34 | wind | 7 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 46 | 612.38 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 74 | 614.73 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 75 | 614.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 97 | 616.48 | wind | 5 | 4320 | > th | dose dependent | rect. | 14 | 5 |
| 107 | 616.68 | humidity | 90 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 112 | 616.96 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 7 |
| 137 | 618.04 | wind | 5 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 141 | 618.18 | wind | 3 | 4320 | > th | dose dependent | rect. | 14 | 11 |
| 159 | 619.04 | wind | 3 | 4320 | > th | dose dependent | rect. | 17 | 6 |
| 172 | 619.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 189 | 620.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 205 | 620.56 | wind | 5 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 227 | 621.34 | humidity | 70 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 228 | 621.35 | wind | 5 | 4320 | < th | dose dependent | rect. | 19 | 4 |
| 249 | 621.69 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 261 | 621.90 | wind | 3 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 279 | 622.25 | wind | 9 | 4320 | < th | dose dependent | rect. | 13 | 14 |
| 345 | 623.54 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 373 | 623.99 | humidity | 90 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 445 | 625.02 | wind | 3 | 4320 | > th | dose dependent | sin | 15 | NA |
| 522 | 625.99 | wind | 3 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 549 | 626.36 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 572 | 626.61 | humidity | 70 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 582 | 626.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 588 | 626.84 | wind | 9 | 4320 | < th | dose dependent | sin | 15 | NA |
| 640 | 627.49 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 20 |
| 650 | 627.71 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 669 | 627.92 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 686 | 628.13 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 713 | 628.51 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 758 | 628.99 | wind | 9 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 790 | 629.31 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 814 | 629.56 | humidity | 80 | 14400 | > th | dose independent | sin | 11 | NA |
| 942 | 631.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 952 | 631.22 | wind | 7 | 4320 | < th | dose independent | sin | 17 | NA |
| 980 | 631.49 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 981 | 631.49 | humidity | 60 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 988 | 631.56 | wind | 5 | 4320 | > th | dose independent | sin | 16 | NA |