Os04g0565500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amino acid/polyamine transporter II family protein.
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Os04g0565500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amino acid/polyamine transporter II family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.05 | 0.453 | 12.5 | 2.11 | 1.93 | -0.972 | -0.686 | 1.62 | 0.749 | 1.2 | 25.31 | 1387 | -- | -- |
| 94.57 | 0.453 | 12.5 | 1.81 | 1.85 | -0.81 | -0.647 | -- | 0.671 | 1.28 | 24.96 | 5746 | -- | -- |
| 94.9 | 0.454 | 12.5 | 2.1 | 1.94 | -0.97 | -- | 1.47 | 0.737 | 1.14 | 25.4 | 1378 | -- | -- |
| 95.45 | 0.455 | 12.6 | 1.73 | 1.9 | -0.866 | -- | -- | 0.628 | 1.16 | 25.8 | 5697 | -- | -- |
| 184.48 | 0.633 | 12.4 | 2.59 | -- | -2.6 | -- | 3.71 | 1.16 | -- | 21.43 | 2 | -- | -- |
| 121.48 | 0.517 | 12.6 | 1.38 | 1.84 | -- | -0.77 | -- | 0.55 | 1.17 | -- | -- | -- | -- |
| 123.87 | 0.521 | 12.6 | 1.41 | 1.84 | -- | -- | -- | 0.555 | 1.1 | -- | -- | -- | -- |
| 191.88 | 0.645 | 12.5 | 1.94 | -- | -2.44 | -- | -- | 0.979 | -- | 21.1 | 2 | -- | -- |
| 165.5 | 0.599 | 12.6 | -- | 1.87 | -0.458 | -- | -- | 0.461 | 1.12 | 28.4 | 7225 | -- | -- |
| 333.05 | 0.853 | 12.5 | 1.48 | -- | -- | -- | -- | 0.591 | -- | -- | -- | -- | -- |
| 176.24 | 0.621 | 12.6 | -- | 1.86 | -- | -- | -- | 0.398 | 1.13 | -- | -- | -- | -- |
| 287.23 | 0.789 | 12.5 | -- | -- | -2.03 | -- | -- | 0.703 | -- | 21.5 | 2 | -- | -- |
| 390.79 | 0.923 | 12.6 | -- | -- | -- | -- | -- | 0.427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.83 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 13 |
| 2 | 88.21 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 5 |
| 5 | 89.27 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 13 | 90.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 24 | 91.20 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 20 |
| 27 | 91.27 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 13 |
| 42 | 91.60 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 14 |
| 49 | 91.72 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 51 | 91.78 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 73 | 92.07 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 78 | 92.12 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 80 | 92.14 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 83 | 92.18 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 90 | 92.20 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 7 |
| 110 | 92.35 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 122 | 92.42 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 123 | 92.42 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 124 | 92.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 130 | 92.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 133 | 92.43 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 143 | 92.45 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 149 | 92.48 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 153 | 92.49 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 185 | 92.57 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 246 | 92.70 | radiation | 10 | 720 | < th | dose dependent | sin | 14 | NA |
| 252 | 92.71 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 17 |
| 306 | 92.85 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 5 |
| 335 | 92.90 | temperature | 30 | 14400 | < th | dose independent | sin | 13 | NA |
| 340 | 92.92 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 345 | 92.93 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 346 | 92.93 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 10 |
| 367 | 92.97 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 449 | 93.07 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 482 | 93.10 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 491 | 93.11 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 499 | 93.11 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 500 | 93.11 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 505 | 93.12 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 536 | 93.15 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 572 | 93.18 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 610 | 93.19 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 651 | 93.21 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 656 | 93.22 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 690 | 93.22 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 19 |
| 820 | 93.27 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 830 | 93.27 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 983 | 93.30 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 21 |
| 994 | 93.31 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |