Os02g0670900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amino acid transporter protein-like.
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Os02g0670900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Amino acid transporter protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.46 | 0.429 | 12.9 | 1.07 | 0.634 | 1.14 | 1.21 | -2.92 | 0.0587 | 3.52 | 28.8 | 2162 | -- | -- |
| 83.76 | 0.426 | 13 | 0.506 | 0.668 | 0.879 | 1.25 | -- | 0.0168 | 3.22 | 26.61 | 2123 | -- | -- |
| 87.88 | 0.437 | 12.9 | 1.04 | 0.636 | 1.12 | -- | -2.79 | 0.06 | 3.44 | 28.76 | 2161 | -- | -- |
| 88.37 | 0.438 | 13 | 0.46 | 0.663 | 0.861 | -- | -- | 0.0174 | 3.53 | 26.6 | 2109 | -- | -- |
| 105.18 | 0.48 | 13 | 0.357 | -- | 0.682 | -- | -0.228 | -0.154 | -- | 28.4 | 1988 | -- | -- |
| 106.89 | 0.485 | 13 | 0.157 | 0.715 | -- | 1.22 | -- | -0.206 | 4.4 | -- | -- | -- | -- |
| 110.95 | 0.493 | 13 | 0.147 | 0.724 | -- | -- | -- | -0.213 | 4.48 | -- | -- | -- | -- |
| 105.27 | 0.48 | 13 | 0.322 | -- | 0.671 | -- | -- | -0.163 | -- | 28.4 | 1988 | -- | -- |
| 93 | 0.449 | 13 | -- | 0.746 | 0.708 | -- | -- | -0.0562 | 3.69 | 26.7 | 2128 | -- | -- |
| 139 | 0.551 | 13 | 0.175 | -- | -- | -- | -- | -0.194 | -- | -- | -- | -- | -- |
| 111.52 | 0.494 | 13 | -- | 0.727 | -- | -- | -- | -0.229 | 4.48 | -- | -- | -- | -- |
| 107.97 | 0.486 | 13 | -- | -- | 0.646 | -- | -- | -0.199 | -- | 28.4 | 1988 | -- | -- |
| 139.81 | 0.552 | 13 | -- | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 4 | 77.92 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 21 |
| 6 | 78.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 11 | 79.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 12 | 79.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 32 | 80.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 35 | 80.75 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 40 | 80.95 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 53 | 81.31 | temperature | 10 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 115 | 82.50 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 140 | 82.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 21 |
| 213 | 83.90 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 215 | 83.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 10 |
| 258 | 84.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 296 | 84.77 | radiation | 10 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 303 | 84.89 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 308 | 84.97 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 316 | 85.03 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 21 |
| 319 | 85.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 322 | 85.05 | radiation | 40 | 90 | < th | dose dependent | rect. | 21 | 21 |
| 327 | 85.10 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 331 | 85.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 351 | 85.27 | temperature | 25 | 270 | > th | dose dependent | sin | 10 | NA |
| 360 | 85.35 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 362 | 85.36 | radiation | 30 | 10 | < th | dose dependent | rect. | 21 | 21 |
| 363 | 85.37 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 14 |
| 365 | 85.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 380 | 85.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 385 | 85.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 15 |
| 393 | 85.53 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 13 |
| 395 | 85.55 | radiation | 20 | 10 | < th | dose independent | rect. | 21 | 21 |
| 422 | 85.67 | radiation | 20 | 10 | < th | dose independent | rect. | 5 | 13 |
| 440 | 85.71 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 21 |
| 447 | 85.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 11 |
| 462 | 85.75 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 3 |
| 469 | 85.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 18 |
| 503 | 85.83 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 505 | 85.84 | temperature | 25 | 1440 | > th | dose dependent | sin | 2 | NA |
| 532 | 85.89 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 765 | 86.28 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 766 | 86.28 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 17 |
| 773 | 86.30 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 854 | 86.44 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 898 | 86.49 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 914 | 86.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 927 | 86.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 967 | 86.61 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 15 |