BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0559400 Os04g0559400|AK106376
         (410 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0559400  Similar to Branched-chain-amino-acid aminotran...   745   0.0  
Os05g0558400  Similar to Branched-chain-amino-acid aminotran...   505   e-143
Os03g0106400  Similar to Branched-chain-amino-acid aminotran...   504   e-143
Os03g0231600  Similar to Branched-chain-amino-acid aminotran...   427   e-120
Os10g0549500  Aminotransferase, class IV family protein           146   3e-35

>Os04g0559400 Similar to Branched-chain-amino-acid aminotransferase 5,
           chloroplast precursor (EC 2.6.1.42) (Atbcat-5)
          Length = 410

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/387 (94%), Positives = 365/387 (94%)

Query: 24  TRRHRAPSHPILKXXXXXXXXXXXXXXXXXXXXXXWSTLVTAAYYTGTAELVDFNWETLG 83
           TRRHRAPSHPILK                      WSTLVTAAYYTGTAELVDFNWETLG
Sbjct: 24  TRRHRAPSHPILKRSAAVCGAVAVCRGGAVARRSRWSTLVTAAYYTGTAELVDFNWETLG 83

Query: 84  FQPVPTDFMYVMRCSEEGVFTKGELVPYGPIELNPAAGVLNYGQGLLEGLRAHRKEDGSV 143
           FQPVPTDFMYVMRCSEEGVFTKGELVPYGPIELNPAAGVLNYGQGLLEGLRAHRKEDGSV
Sbjct: 84  FQPVPTDFMYVMRCSEEGVFTKGELVPYGPIELNPAAGVLNYGQGLLEGLRAHRKEDGSV 143

Query: 144 LLFRPDENALRMRVGADRLCMPAPSVEQFLEAIKLTILANKRWVPPTGKGSLYIRPLLIG 203
           LLFRPDENALRMRVGADRLCMPAPSVEQFLEAIKLTILANKRWVPPTGKGSLYIRPLLIG
Sbjct: 144 LLFRPDENALRMRVGADRLCMPAPSVEQFLEAIKLTILANKRWVPPTGKGSLYIRPLLIG 203

Query: 204 SGAILGVAPAPEYTFVVFACPVGHYFKDGLSPISLLTEEEYQCAAPGGTGDIKTIGNYAS 263
           SGAILGVAPAPEYTFVVFACPVGHYFKDGLSPISLLTEEEYQCAAPGGTGDIKTIGNYAS
Sbjct: 204 SGAILGVAPAPEYTFVVFACPVGHYFKDGLSPISLLTEEEYQCAAPGGTGDIKTIGNYAS 263

Query: 264 AVYAKERAKERGHSDVLYLDPVHKKFVEELSSCNIFMVKDNIISTPLLTGTVLPGITRRS 323
           AVYAKERAKERGHSDVLYLDPVHKKFVEELSSCNIFMVKDNIISTPLLTGTVLPGITRRS
Sbjct: 264 AVYAKERAKERGHSDVLYLDPVHKKFVEELSSCNIFMVKDNIISTPLLTGTVLPGITRRS 323

Query: 324 IIEYARSLGFQVEECLITIDELLDADEVFCTGTSVVLSSVGCIVYQGRRVEYGNQKFRTV 383
           IIEYARSLGFQVEECLITIDELLDADEVFCTGTSVVLSSVGCIVYQGRRVEYGNQKFRTV
Sbjct: 324 IIEYARSLGFQVEECLITIDELLDADEVFCTGTSVVLSSVGCIVYQGRRVEYGNQKFRTV 383

Query: 384 SQQLYSALTAIQKGLVEDSMGWTVQLN 410
           SQQLYSALTAIQKGLVEDSMGWTVQLN
Sbjct: 384 SQQLYSALTAIQKGLVEDSMGWTVQLN 410



>Os05g0558400 Similar to Branched-chain-amino-acid aminotransferase 3,
           chloroplast precursor (EC 2.6.1.42) (Atbcat-3)
          Length = 409

 Score =  505 bits (1300), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 229/347 (65%), Positives = 297/347 (85%), Gaps = 1/347 (0%)

Query: 65  AAYYTGTAELVDFNWETLGFQPVPTDFMYVMRCSEEGVFTKGELVPYGPIELNPAAGVLN 124
           A+ YT  +E+ D +WE LGF  V TD+MY+ +C ++G F++GE++P+GPI LNP++GVLN
Sbjct: 63  ASDYTKASEVADLDWENLGFGIVQTDYMYITKCGQDGNFSEGEMIPFGPIALNPSSGVLN 122

Query: 125 YGQGLLEGLRAHRKEDGSVLLFRPDENALRMRVGADRLCMPAPSVEQFLEAIKLTILANK 184
           YGQGL EGL+A+R  D S+LLFRP+ENALRMR GA+R+CMPAPSVEQF++A+K T+LANK
Sbjct: 123 YGQGLFEGLKAYRTTDDSILLFRPEENALRMRTGAERMCMPAPSVEQFVDAVKQTVLANK 182

Query: 185 RWVPPTGKGSLYIRPLLIGSGAILGVAPAPEYTFVVFACPVGHYFKDGLSPISLLTEEEY 244
           RWVPPTGKGSLYIRPLL+GSGA+LG+APAPEYTF++F  PVG+YFK+GL+PI+L+ E+++
Sbjct: 183 RWVPPTGKGSLYIRPLLMGSGAVLGLAPAPEYTFIIFVSPVGNYFKEGLAPINLIVEDKF 242

Query: 245 QCAAPGGTGDIKTIGNYASAVYAKERAKERGHSDVLYLDPVHKKFVEELSSCNIFMVKDN 304
             A PGGTG +KTIGNYAS + A++ AKE+G+SDVLYLD VHKK++EE+SSCNIF+VK N
Sbjct: 243 HRATPGGTGSVKTIGNYASVLMAQKIAKEKGYSDVLYLDAVHKKYLEEVSSCNIFVVKGN 302

Query: 305 IISTPLLTGTVLPGITRRSIIEYARSLGFQVEECLITIDELLDADEVFCTGTSVVLSSVG 364
           +ISTP + GT+LPGITR+SII+ A S GFQVEE L+++DELL+ADEVFCTGT+VV+S VG
Sbjct: 303 VISTPAVKGTILPGITRKSIIDVALSKGFQVEERLVSVDELLEADEVFCTGTAVVVSPVG 362

Query: 365 CIVYQGRRVEY-GNQKFRTVSQQLYSALTAIQKGLVEDSMGWTVQLN 410
            I YQG+RVEY GN+    VSQQLY++LT++Q G  ED + WTVQL+
Sbjct: 363 SITYQGKRVEYAGNKGVGVVSQQLYTSLTSLQMGQAEDWLVWTVQLS 409



>Os03g0106400 Similar to Branched-chain-amino-acid aminotransferase 5,
           chloroplast precursor (EC 2.6.1.42) (Atbcat-5)
          Length = 405

 Score =  504 bits (1297), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 230/346 (66%), Positives = 294/346 (84%)

Query: 65  AAYYTGTAELVDFNWETLGFQPVPTDFMYVMRCSEEGVFTKGELVPYGPIELNPAAGVLN 124
           A  Y  T+ + D +WE LGF  V TDFMY+ +C  +G F+KGE+VP+GPIEL+P+AGVLN
Sbjct: 59  ATNYMETSAVADLDWENLGFGLVQTDFMYIAKCGPDGNFSKGEMVPFGPIELSPSAGVLN 118

Query: 125 YGQGLLEGLRAHRKEDGSVLLFRPDENALRMRVGADRLCMPAPSVEQFLEAIKLTILANK 184
           YGQGL EGL+A+RK DG +LLFRP+ENA+RMR GA+R+CMPAP++EQF++A+K T+LANK
Sbjct: 119 YGQGLFEGLKAYRKTDGYILLFRPEENAIRMRNGAERMCMPAPTLEQFVDAVKQTVLANK 178

Query: 185 RWVPPTGKGSLYIRPLLIGSGAILGVAPAPEYTFVVFACPVGHYFKDGLSPISLLTEEEY 244
           RWVPPTGKGSLYIRPLL+GSGA+LG+APAPEYTF++F  PVG+YFK+GL+PI+L+ EE +
Sbjct: 179 RWVPPTGKGSLYIRPLLMGSGAVLGLAPAPEYTFMIFVSPVGNYFKEGLAPINLIIEENF 238

Query: 245 QCAAPGGTGDIKTIGNYASAVYAKERAKERGHSDVLYLDPVHKKFVEELSSCNIFMVKDN 304
             AAPGGTG +KTIGNYAS + A+  AK++G+SDVLYLD VHKK++EE+SSCNIF+VK N
Sbjct: 239 HRAAPGGTGGVKTIGNYASVLKAQRIAKQKGYSDVLYLDAVHKKYLEEVSSCNIFIVKGN 298

Query: 305 IISTPLLTGTVLPGITRRSIIEYARSLGFQVEECLITIDELLDADEVFCTGTSVVLSSVG 364
           +ISTP + GT+LPGITR+SI+E A+  GF VEE L+++DELL+ADEVFCTGT+VV+S VG
Sbjct: 299 VISTPAIKGTILPGITRKSILEVAQRKGFMVEERLVSVDELLEADEVFCTGTAVVVSPVG 358

Query: 365 CIVYQGRRVEYGNQKFRTVSQQLYSALTAIQKGLVEDSMGWTVQLN 410
            I Y G+RVEYGNQ    V QQLY++LT++Q G V+D MGWTV+LN
Sbjct: 359 SITYLGQRVEYGNQGVGVVCQQLYTSLTSLQMGHVDDCMGWTVELN 404



>Os03g0231600 Similar to Branched-chain-amino-acid aminotransferase 3,
           chloroplast precursor (EC 2.6.1.42) (Atbcat-3)
          Length = 415

 Score =  427 bits (1099), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/338 (60%), Positives = 269/338 (79%), Gaps = 4/338 (1%)

Query: 76  DFNWETLGFQPVPTDFMYVMRCS-EEGVFTKGELVPYGPIELNPAAGVLNYGQGLLEGLR 134
           + +W+ LGF   PTD+MYVMRCS E+GVF++GEL  YG IEL+P++GV+NYGQGL EGL+
Sbjct: 79  EIDWDNLGFGLTPTDYMYVMRCSLEDGVFSRGELSRYGNIELSPSSGVINYGQGLFEGLK 138

Query: 135 AHR--KEDGSVLLFRPDENALRMRVGADRLCMPAPSVEQFLEAIKLTILANKRWVPPTGK 192
           A+R   + GS +LFRP+ENA RM+ GA+R+CMP+PSVEQF+ A+K T+LAN+RWVPP GK
Sbjct: 139 AYRAANQQGSYMLFRPEENARRMQHGAERMCMPSPSVEQFVHAVKQTVLANRRWVPPQGK 198

Query: 193 GSLYIRPLLIGSGAILGVAPAPEYTFVVFACPVGHYFKDGLSPISLLTEEEYQCAAPGGT 252
           G+LYIRPLLIGSG ILG+APAPEYTF+++A PVG YFK+GL+PI+L+ E+    A PGGT
Sbjct: 199 GALYIRPLLIGSGPILGLAPAPEYTFLIYAAPVGTYFKEGLAPINLVVEDSIHRAMPGGT 258

Query: 253 GDIKTIGNYASAVYAKERAKERGHSDVLYLDPVHKKFVEELSSCNIFMVKDNIISTPLLT 312
           G +KTI NYA  + A+  AK RG +DVLYLD VHK ++EE SSCN+F+VKD +++TP   
Sbjct: 259 GGVKTITNYAPVLKAQMDAKSRGFTDVLYLDAVHKTYLEEASSCNLFIVKDGVVATPATV 318

Query: 313 GTVLPGITRRSIIEYARSLGFQVEECLITIDELLDADEVFCTGTSVVLSSVGCIVYQGRR 372
           GT+LPGITR+S+IE AR  G+QVEE L++ID+L+ ADEVFCTGT+VV++ V  + Y G+R
Sbjct: 319 GTILPGITRKSVIELARDRGYQVEERLVSIDDLVGADEVFCTGTAVVVAPVSSVTYHGQR 378

Query: 373 VEYGNQKFRTVSQQLYSALTAIQKGLVEDSMGWTVQLN 410
            E+      T+SQ L++ LT+IQ GL ED  GWTV ++
Sbjct: 379 YEF-RTGHDTLSQTLHTTLTSIQMGLAEDKKGWTVAID 415



>Os10g0549500 Aminotransferase, class IV family protein
          Length = 118

 Score =  146 bits (368), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 91/110 (82%), Gaps = 1/110 (0%)

Query: 302 KDNIISTPLLTGTVLPGITRRSIIEYARSLGFQVEECLITIDELLDADEVFCTGTSVVLS 361
           + N+ISTP + GT+LPGITR+SII+ A S GFQVEE L+++DELL+ADEVFCTGT+VV+S
Sbjct: 9   QGNVISTPAVKGTILPGITRKSIIDVALSKGFQVEERLVSVDELLEADEVFCTGTAVVVS 68

Query: 362 SVGCIVYQGRRVEY-GNQKFRTVSQQLYSALTAIQKGLVEDSMGWTVQLN 410
            VG I YQG+RVEY GN+    VSQQLY++LT++Q G  ED +GWTVQL+
Sbjct: 69  PVGSITYQGKRVEYAGNKGVGVVSQQLYTSLTSLQMGQAEDWLGWTVQLS 118



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,193,398
Number of extensions: 584978
Number of successful extensions: 1071
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1064
Number of HSP's successfully gapped: 6
Length of query: 410
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 307
Effective length of database: 11,657,759
Effective search space: 3578932013
Effective search space used: 3578932013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)