Os04g0559400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Branched-chain-amino-acid aminotransferase 5, chloroplast precursor (EC 2.6.1.42) (Atbcat-5).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0559400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Branched-chain-amino-acid aminotransferase 5, chloroplast precursor (EC 2.6.1.42) (Atbcat-5).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.95 | 0.506 | 9.07 | -0.02 | 2.02 | 0.737 | -1.19 | -0.422 | 0.179 | 23.4 | 73.01 | 1349 | -- | -- |
| 116.35 | 0.502 | 9.08 | -0.0872 | 2.03 | 0.72 | -1.17 | -- | 0.164 | 23.4 | 73.08 | 1343 | -- | -- |
| 122 | 0.514 | 9.07 | 0.0149 | 2.03 | 0.752 | -- | -0.306 | 0.182 | 23.4 | 73.18 | 1355 | -- | -- |
| 122.19 | 0.515 | 9.08 | -0.0315 | 2.04 | 0.744 | -- | -- | 0.169 | 23.4 | 73.42 | 1343 | -- | -- |
| 279.65 | 0.783 | 9.04 | -0.00131 | -- | 0.999 | -- | -1.2 | 0.106 | -- | 73.89 | 1577 | -- | -- |
| 134.81 | 0.544 | 9.1 | -0.22 | 1.97 | -- | -1.28 | -- | 0.0599 | 23.3 | -- | -- | -- | -- |
| 141.81 | 0.558 | 9.1 | -0.167 | 1.98 | -- | -- | -- | 0.0652 | 23.3 | -- | -- | -- | -- |
| 288.09 | 0.794 | 9.05 | -0.038 | -- | 0.99 | -- | -- | 0.0931 | -- | 73.62 | 1568 | -- | -- |
| 122.21 | 0.515 | 9.08 | -- | 2.04 | 0.748 | -- | -- | 0.173 | 23.4 | 73.39 | 1343 | -- | -- |
| 387.34 | 0.92 | 9.05 | -0.117 | -- | -- | -- | -- | 0.0841 | -- | -- | -- | -- | -- |
| 142.55 | 0.559 | 9.1 | -- | 1.98 | -- | -- | -- | 0.0838 | 23.3 | -- | -- | -- | -- |
| 282.47 | 0.785 | 9.05 | -- | -- | 0.994 | -- | -- | 0.117 | -- | 75 | 1584 | -- | -- |
| 387.7 | 0.919 | 9.05 | -- | -- | -- | -- | -- | 0.0971 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.24 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 17 |
| 3 | 113.76 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 13 |
| 15 | 113.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 22 | 113.97 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 44 | 114.28 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 2 | 11 |
| 50 | 114.50 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 2 | 12 |
| 60 | 114.58 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 61 | 114.61 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 71 | 114.70 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 75 | 114.72 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 108 | 115.08 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 115 | 115.12 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 5 | NA |
| 117 | 115.13 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 140 | 115.28 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 150 | 115.36 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 4 |
| 157 | 115.39 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 169 | 115.46 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 5 | 19 |
| 187 | 115.56 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 4 | NA |
| 198 | 115.64 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 239 | 115.81 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 325 | 116.20 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 327 | 116.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 366 | 116.42 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 367 | 116.42 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 3 |
| 373 | 116.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 393 | 116.56 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 395 | 116.56 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 420 | 116.65 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 494 | 116.88 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 20 | 17 |
| 506 | 116.92 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 4 |
| 534 | 117.01 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 559 | 117.09 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 579 | 117.15 | temperature | 20.0 | 1440 | > th | dose independent | sin | 11 | NA |
| 636 | 117.33 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 652 | 117.37 | humidity | 70.0 | 10 | > th | dose dependent | sin | 3 | NA |
| 662 | 117.39 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 711 | 117.53 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 749 | 117.62 | temperature | 20.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 753 | 117.62 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 773 | 117.67 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 779 | 117.69 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 865 | 117.88 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 881 | 117.91 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 908 | 117.98 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 951 | 118.08 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 988 | 118.15 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 15 | 1 |