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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0106400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Branched-chain-amino-acid aminotransferase 5, chloroplast precursor (EC 2.6.1.42) (Atbcat-5).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.35 (0.0511) R2 : 0.357
β1 : -2.27 (0.186) R2dD : 0.218 R2D : 0.153
β2 : 1.91 (0.181) R2dC : 0.344 R2C : -0.0494
β3 : -1.58 (0.208) R2dE : 0.178 R2E : -0.213
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.623 (0.11) R2dN8 : 0.0621 R2N8 : -0.012
σ : 0.951
deviance : 417.14
__
_____
C
peak time of C : 1.61
E
wheather : radiation
threshold : 19.18
memory length : 489
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
406.86 0.948 4.36 -2.4 1.91 -1.67 -1.66 3.33 -0.67 1.71 20 500 -- --
417.1 0.951 4.35 -2.24 2 -1.66 0.149 -- -0.612 1.73 16.72 489 -- --
412.22 0.946 4.38 -2.45 1.8 -1.7 -- 1.91 -0.714 1.75 20.15 528 -- --
417.14 0.951 4.35 -2.27 1.91 -1.58 -- -- -0.623 1.61 19.18 489 -- --
439.88 0.977 4.36 -2.37 -- -1.75 -- 1.96 -0.697 -- 8.874 1165 -- --
435.75 0.979 4.34 -2.22 1.16 -- -0.446 -- -0.484 22.7 -- -- -- --
436.55 0.978 4.34 -2.2 1.16 -- -- -- -0.483 22.7 -- -- -- --
442.32 0.98 4.35 -2.22 -- -1.78 -- -- -0.663 -- 8.839 1171 -- --
544.96 1.09 4.3 -- 2.21 -1.65 -- -- -0.35 1.47 10 450 -- --
519.36 1.06 4.31 -2.18 -- -- -- -- -0.476 -- -- -- -- --
564.52 1.11 4.28 -- 1.14 -- -- -- -0.238 22.6 -- -- -- --
569.82 1.11 4.29 -- -- -1.78 -- -- -0.422 -- 10 1174 -- --
644.77 1.19 4.25 -- -- -- -- -- -0.235 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 401.29 temperature 15.0 1440 > th dose independent rect. 11 1
2 401.32 temperature 15.0 30 > th dose independent rect. 11 23
3 404.21 wind 1.0 30 < th dose independent rect. 10 1
8 404.21 atmosphere 995.0 1440 > th dose independent rect. 11 1
11 404.21 precipitation 0.1 1440 < th dose independent rect. 11 1
12 404.21 temperature 10.0 1440 > th dose independent rect. 12 23
15 404.21 wind 1.0 30 < th dose dependent rect. 10 1
16 404.21 precipitation 0.1 1440 < th dose dependent rect. 11 1
17 404.30 radiation 20.0 30 > th dose independent rect. 10 1
18 404.50 temperature 25.0 30 > th dose independent rect. 10 1
20 404.53 humidity 80.0 30 < th dose dependent rect. 10 1
21 404.54 humidity 70.0 30 < th dose independent rect. 10 1
23 404.59 temperature 20.0 30 > th dose dependent rect. 10 1
27 404.63 temperature 30.0 30 < th dose independent rect. 10 1
29 404.66 humidity 90.0 1440 < th dose independent rect. 11 1
31 404.69 atmosphere 1005.0 30 > th dose independent rect. 10 1
32 404.72 atmosphere 1005.0 30 > th dose dependent rect. 10 1
33 404.72 radiation 1.0 30 > th dose dependent rect. 10 1
39 404.90 temperature 10.0 30 > th dose independent rect. 10 1
41 404.90 humidity 50.0 30 > th dose independent rect. 10 1
43 404.90 atmosphere 995.0 30 > th dose independent rect. 10 1
44 404.90 atmosphere 1015.0 30 < th dose independent rect. 10 1
46 404.90 radiation 40.0 30 < th dose independent rect. 10 1
47 404.90 precipitation 0.1 30 < th dose independent rect. 10 1
49 404.90 precipitation 0.1 30 < th dose dependent rect. 10 1
51 404.92 wind 5.0 30 < th dose dependent rect. 10 1
52 404.94 wind 1.0 30 > th dose independent rect. 10 1
58 405.04 wind 9.0 30 < th dose independent rect. 10 1
64 405.46 wind 1.0 30 > th dose dependent rect. 10 1
65 405.76 atmosphere 1015.0 30 < th dose dependent rect. 10 1
66 405.77 wind 9.0 30 < th dose independent rect. 11 23
67 405.87 humidity 50.0 30 > th dose dependent rect. 10 1
71 406.14 radiation 40.0 30 < th dose dependent rect. 10 1
75 406.34 atmosphere 1010.0 10 < th dose dependent rect. 18 12
81 406.95 radiation 30.0 4320 > th dose dependent rect. 15 17
89 407.26 atmosphere 1000.0 30 > th dose independent rect. 11 23
91 407.29 atmosphere 1010.0 720 < th dose dependent rect. 17 2
99 407.77 atmosphere 1015.0 270 < th dose dependent rect. 15 13
100 407.81 radiation 10.0 720 < th dose dependent rect. 6 17
128 408.33 radiation 20.0 720 < th dose dependent rect. 20 21
132 408.48 radiation 20.0 720 < th dose dependent rect. 3 20
136 408.60 radiation 20.0 4320 < th dose independent rect. 15 1
140 408.63 radiation 10.0 270 < th dose independent rect. 19 22
150 408.82 atmosphere 995.0 720 > th dose dependent rect. 19 4
163 409.22 radiation 10.0 270 < th dose independent rect. 3 23
165 409.24 radiation 20.0 720 < th dose independent rect. 20 19
169 409.31 radiation 20.0 720 < th dose independent sin 5 NA
178 409.54 radiation 20.0 720 < th dose dependent sin 4 NA
192 409.73 radiation 20.0 4320 < th dose independent rect. 15 16
194 409.73 radiation 20.0 720 < th dose dependent rect. 15 23
199 409.78 radiation 1.0 1440 > th dose independent rect. 11 1
203 409.84 radiation 20.0 720 < th dose independent rect. 1 13
222 410.08 radiation 20.0 4320 < th dose independent rect. 15 11
227 410.11 radiation 20.0 720 < th dose independent rect. 16 22
230 410.12 radiation 20.0 4320 < th dose independent rect. 15 5
233 410.13 radiation 20.0 4320 < th dose independent rect. 15 3
246 410.24 wind 1.0 43200 > th dose independent rect. 21 2
252 410.28 radiation 20.0 720 < th dose independent rect. 2 11
253 410.28 atmosphere 995.0 270 > th dose dependent rect. 18 13
259 410.32 radiation 20.0 720 < th dose dependent rect. 2 12
262 410.34 atmosphere 1015.0 90 < th dose dependent sin 12 NA
264 410.36 temperature 25.0 720 > th dose independent rect. 18 3
266 410.40 radiation 20.0 720 < th dose independent rect. 1 22
267 410.42 precipitation 0.1 43200 > th dose dependent rect. 20 4
278 410.48 radiation 20.0 720 < th dose dependent rect. 1 15
281 410.51 temperature 25.0 4320 > th dose dependent rect. 18 1
303 410.65 radiation 20.0 720 < th dose dependent no NA NA
320 410.75 radiation 10.0 720 > th dose independent rect. 15 22
328 410.79 radiation 20.0 720 < th dose dependent rect. 13 23
333 410.83 precipitation 0.1 43200 < th dose independent rect. 20 3
334 410.83 precipitation 0.1 43200 < th dose dependent rect. 20 3
339 410.89 precipitation 0.1 43200 > th dose independent rect. 20 3
351 410.96 atmosphere 995.0 30 > th dose dependent rect. 11 23
357 410.97 temperature 15.0 720 > th dose dependent rect. 14 6
361 410.98 radiation 20.0 720 < th dose dependent rect. 9 23
372 411.04 temperature 25.0 4320 > th dose dependent rect. 17 5
375 411.05 radiation 20.0 720 < th dose dependent rect. 5 23
378 411.06 radiation 20.0 720 < th dose independent rect. 9 23
391 411.12 radiation 20.0 4320 > th dose dependent rect. 15 1
419 411.23 radiation 20.0 720 < th dose dependent rect. 11 23
428 411.27 radiation 10.0 720 > th dose independent rect. 15 20
430 411.28 radiation 20.0 720 > th dose independent rect. 10 1
432 411.28 temperature 20.0 720 > th dose dependent rect. 15 9
461 411.44 precipitation 0.1 43200 > th dose dependent rect. 21 1
464 411.45 radiation 20.0 90 < th dose independent rect. 21 16
466 411.46 radiation 20.0 4320 < th dose independent rect. 15 20
467 411.46 radiation 20.0 720 < th dose independent rect. 13 23
473 411.47 radiation 20.0 4320 < th dose independent sin 13 NA
505 411.52 temperature 25.0 4320 > th dose dependent rect. 21 1
545 411.61 radiation 20.0 720 < th dose independent no NA NA
549 411.62 radiation 20.0 90 < th dose independent rect. 21 18
551 411.63 radiation 20.0 4320 > th dose independent rect. 15 1
560 411.65 radiation 1.0 720 > th dose dependent rect. 15 20
576 411.71 radiation 10.0 720 < th dose independent rect. 5 18
577 411.71 temperature 20.0 270 > th dose dependent sin 12 NA
582 411.72 temperature 20.0 270 > th dose dependent rect. 17 12
614 411.83 temperature 30.0 720 > th dose independent rect. 16 2
619 411.85 precipitation 0.1 30 < th dose independent rect. 11 23
620 411.85 radiation 40.0 14400 > th dose dependent rect. 12 1
625 411.85 precipitation 0.1 30 < th dose dependent rect. 11 23
637 411.89 radiation 30.0 14400 < th dose independent rect. 11 2
643 411.90 radiation 1.0 720 > th dose dependent rect. 9 2
664 411.96 temperature 25.0 4320 > th dose dependent rect. 17 15
674 412.01 radiation 10.0 720 < th dose independent rect. 15 19
834 412.36 radiation 1.0 14400 > th dose dependent rect. 17 13
847 412.41 temperature 25.0 720 > th dose dependent rect. 18 1
867 412.45 radiation 30.0 14400 > th dose independent rect. 11 2
889 412.48 humidity 50.0 30 > th dose independent rect. 11 23
899 412.50 radiation 20.0 90 < th dose independent rect. 6 9
920 412.57 precipitation 0.1 43200 > th dose independent rect. 17 7
921 412.57 precipitation 0.1 43200 < th dose independent rect. 17 7
923 412.57 precipitation 0.1 43200 < th dose dependent rect. 17 7
933 412.59 temperature 15.0 720 > th dose dependent sin 17 NA
961 412.65 radiation 20.0 14400 < th dose dependent rect. 17 14
962 412.65 radiation 40.0 14400 > th dose dependent rect. 11 22
965 412.66 radiation 40.0 14400 > th dose dependent rect. 11 5
989 412.67 radiation 10.0 14400 < th dose dependent rect. 16 18
990 412.67 radiation 10.0 14400 < th dose dependent rect. 16 20
992 412.68 radiation 20.0 4320 > th dose independent rect. 15 20