BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0106400 Os03g0106400|AK108687
(405 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0106400 Similar to Branched-chain-amino-acid aminotran... 835 0.0
Os05g0558400 Similar to Branched-chain-amino-acid aminotran... 647 0.0
Os04g0559400 Similar to Branched-chain-amino-acid aminotran... 504 e-143
Os03g0231600 Similar to Branched-chain-amino-acid aminotran... 471 e-133
Os10g0549500 Aminotransferase, class IV family protein 183 2e-46
AK063664 67 3e-11
>Os03g0106400 Similar to Branched-chain-amino-acid aminotransferase 5,
chloroplast precursor (EC 2.6.1.42) (Atbcat-5)
Length = 405
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/405 (100%), Positives = 405/405 (100%)
Query: 1 MELHLTSRGALPLSPPLAGQRRPHLSLSTPSLPIKNHTYSVPPPFSKAHCAIGCQASLAT 60
MELHLTSRGALPLSPPLAGQRRPHLSLSTPSLPIKNHTYSVPPPFSKAHCAIGCQASLAT
Sbjct: 1 MELHLTSRGALPLSPPLAGQRRPHLSLSTPSLPIKNHTYSVPPPFSKAHCAIGCQASLAT 60
Query: 61 NYMETSAVADLDWENLGFGLVQTDFMYIAKCGPDGNFSKGEMVPFGPIELSPSAGVLNYG 120
NYMETSAVADLDWENLGFGLVQTDFMYIAKCGPDGNFSKGEMVPFGPIELSPSAGVLNYG
Sbjct: 61 NYMETSAVADLDWENLGFGLVQTDFMYIAKCGPDGNFSKGEMVPFGPIELSPSAGVLNYG 120
Query: 121 QGLFEGLKAYRKTDGYILLFRPEENAIRMRNGAERMCMPAPTLEQFVDAVKQTVLANKRW 180
QGLFEGLKAYRKTDGYILLFRPEENAIRMRNGAERMCMPAPTLEQFVDAVKQTVLANKRW
Sbjct: 121 QGLFEGLKAYRKTDGYILLFRPEENAIRMRNGAERMCMPAPTLEQFVDAVKQTVLANKRW 180
Query: 181 VPPTGKGSLYIRPLLMGSGAVLGLAPAPEYTFMIFVSPVGNYFKEGLAPINLIIEENFHR 240
VPPTGKGSLYIRPLLMGSGAVLGLAPAPEYTFMIFVSPVGNYFKEGLAPINLIIEENFHR
Sbjct: 181 VPPTGKGSLYIRPLLMGSGAVLGLAPAPEYTFMIFVSPVGNYFKEGLAPINLIIEENFHR 240
Query: 241 AAPGGTGGVKTIGNYASVLKAQRIAKQKGYSDVLYLDAVHKKYLEEVSSCNIFIVKGNVI 300
AAPGGTGGVKTIGNYASVLKAQRIAKQKGYSDVLYLDAVHKKYLEEVSSCNIFIVKGNVI
Sbjct: 241 AAPGGTGGVKTIGNYASVLKAQRIAKQKGYSDVLYLDAVHKKYLEEVSSCNIFIVKGNVI 300
Query: 301 STPAIKGTILPGITRKSILEVAQRKGFMVEERLVSVDELLEADEVFCTGTAVVVSPVGSI 360
STPAIKGTILPGITRKSILEVAQRKGFMVEERLVSVDELLEADEVFCTGTAVVVSPVGSI
Sbjct: 301 STPAIKGTILPGITRKSILEVAQRKGFMVEERLVSVDELLEADEVFCTGTAVVVSPVGSI 360
Query: 361 TYLGQRVEYGNQGVGVVCQQLYTSLTSLQMGHVDDCMGWTVELNQ 405
TYLGQRVEYGNQGVGVVCQQLYTSLTSLQMGHVDDCMGWTVELNQ
Sbjct: 361 TYLGQRVEYGNQGVGVVCQQLYTSLTSLQMGHVDDCMGWTVELNQ 405
>Os05g0558400 Similar to Branched-chain-amino-acid aminotransferase 3,
chloroplast precursor (EC 2.6.1.42) (Atbcat-3)
Length = 409
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/409 (78%), Positives = 356/409 (87%), Gaps = 5/409 (1%)
Query: 1 MELHLTSRGALPLSPPLAGQRRPHLSLSTPS----LPIKNHTYSVPPPFSKAHCAIGCQA 56
ME +RGAL + PL+G RR L LS+P + I+N YS+ KA C+A
Sbjct: 1 MEYGAATRGALLAAAPLSGARRSWLPLSSPPSPPSIQIQNRLYSISSLPLKARGVRRCEA 60
Query: 57 SLATNYMETSAVADLDWENLGFGLVQTDFMYIAKCGPDGNFSKGEMVPFGPIELSPSAGV 116
SLA++Y + S VADLDWENLGFG+VQTD+MYI KCG DGNFS+GEM+PFGPI L+PS+GV
Sbjct: 61 SLASDYTKASEVADLDWENLGFGIVQTDYMYITKCGQDGNFSEGEMIPFGPIALNPSSGV 120
Query: 117 LNYGQGLFEGLKAYRKTDGYILLFRPEENAIRMRNGAERMCMPAPTLEQFVDAVKQTVLA 176
LNYGQGLFEGLKAYR TD ILLFRPEENA+RMR GAERMCMPAP++EQFVDAVKQTVLA
Sbjct: 121 LNYGQGLFEGLKAYRTTDDSILLFRPEENALRMRTGAERMCMPAPSVEQFVDAVKQTVLA 180
Query: 177 NKRWVPPTGKGSLYIRPLLMGSGAVLGLAPAPEYTFMIFVSPVGNYFKEGLAPINLIIEE 236
NKRWVPPTGKGSLYIRPLLMGSGAVLGLAPAPEYTF+IFVSPVGNYFKEGLAPINLI+E+
Sbjct: 181 NKRWVPPTGKGSLYIRPLLMGSGAVLGLAPAPEYTFIIFVSPVGNYFKEGLAPINLIVED 240
Query: 237 NFHRAAPGGTGGVKTIGNYASVLKAQRIAKQKGYSDVLYLDAVHKKYLEEVSSCNIFIVK 296
FHRA PGGTG VKTIGNYASVL AQ+IAK+KGYSDVLYLDAVHKKYLEEVSSCNIF+VK
Sbjct: 241 KFHRATPGGTGSVKTIGNYASVLMAQKIAKEKGYSDVLYLDAVHKKYLEEVSSCNIFVVK 300
Query: 297 GNVISTPAIKGTILPGITRKSILEVAQRKGFMVEERLVSVDELLEADEVFCTGTAVVVSP 356
GNVISTPA+KGTILPGITRKSI++VA KGF VEERLVSVDELLEADEVFCTGTAVVVSP
Sbjct: 301 GNVISTPAVKGTILPGITRKSIIDVALSKGFQVEERLVSVDELLEADEVFCTGTAVVVSP 360
Query: 357 VGSITYLGQRVEY-GNQGVGVVCQQLYTSLTSLQMGHVDDCMGWTVELN 404
VGSITY G+RVEY GN+GVGVV QQLYTSLTSLQMG +D + WTV+L+
Sbjct: 361 VGSITYQGKRVEYAGNKGVGVVSQQLYTSLTSLQMGQAEDWLVWTVQLS 409
>Os04g0559400 Similar to Branched-chain-amino-acid aminotransferase 5,
chloroplast precursor (EC 2.6.1.42) (Atbcat-5)
Length = 410
Score = 504 bits (1298), Expect = e-143, Method: Compositional matrix adjust.
Identities = 230/346 (66%), Positives = 294/346 (84%)
Query: 59 ATNYMETSAVADLDWENLGFGLVQTDFMYIAKCGPDGNFSKGEMVPFGPIELSPSAGVLN 118
A Y T+ + D +WE LGF V TDFMY+ +C +G F+KGE+VP+GPIEL+P+AGVLN
Sbjct: 65 AAYYTGTAELVDFNWETLGFQPVPTDFMYVMRCSEEGVFTKGELVPYGPIELNPAAGVLN 124
Query: 119 YGQGLFEGLKAYRKTDGYILLFRPEENAIRMRNGAERMCMPAPTLEQFVDAVKQTVLANK 178
YGQGL EGL+A+RK DG +LLFRP+ENA+RMR GA+R+CMPAP++EQF++A+K T+LANK
Sbjct: 125 YGQGLLEGLRAHRKEDGSVLLFRPDENALRMRVGADRLCMPAPSVEQFLEAIKLTILANK 184
Query: 179 RWVPPTGKGSLYIRPLLMGSGAVLGLAPAPEYTFMIFVSPVGNYFKEGLAPINLIIEENF 238
RWVPPTGKGSLYIRPLL+GSGA+LG+APAPEYTF++F PVG+YFK+GL+PI+L+ EE +
Sbjct: 185 RWVPPTGKGSLYIRPLLIGSGAILGVAPAPEYTFVVFACPVGHYFKDGLSPISLLTEEEY 244
Query: 239 HRAAPGGTGGVKTIGNYASVLKAQRIAKQKGYSDVLYLDAVHKKYLEEVSSCNIFIVKGN 298
AAPGGTG +KTIGNYAS + A+ AK++G+SDVLYLD VHKK++EE+SSCNIF+VK N
Sbjct: 245 QCAAPGGTGDIKTIGNYASAVYAKERAKERGHSDVLYLDPVHKKFVEELSSCNIFMVKDN 304
Query: 299 VISTPAIKGTILPGITRKSILEVAQRKGFMVEERLVSVDELLEADEVFCTGTAVVVSPVG 358
+ISTP + GT+LPGITR+SI+E A+ GF VEE L+++DELL+ADEVFCTGT+VV+S VG
Sbjct: 305 IISTPLLTGTVLPGITRRSIIEYARSLGFQVEECLITIDELLDADEVFCTGTSVVLSSVG 364
Query: 359 SITYLGQRVEYGNQGVGVVCQQLYTSLTSLQMGHVDDCMGWTVELN 404
I Y G+RVEYGNQ V QQLY++LT++Q G V+D MGWTV+LN
Sbjct: 365 CIVYQGRRVEYGNQKFRTVSQQLYSALTAIQKGLVEDSMGWTVQLN 410
>Os03g0231600 Similar to Branched-chain-amino-acid aminotransferase 3,
chloroplast precursor (EC 2.6.1.42) (Atbcat-3)
Length = 415
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/338 (68%), Positives = 284/338 (84%), Gaps = 4/338 (1%)
Query: 70 DLDWENLGFGLVQTDFMYIAKCG-PDGNFSKGEMVPFGPIELSPSAGVLNYGQGLFEGLK 128
++DW+NLGFGL TD+MY+ +C DG FS+GE+ +G IELSPS+GV+NYGQGLFEGLK
Sbjct: 79 EIDWDNLGFGLTPTDYMYVMRCSLEDGVFSRGELSRYGNIELSPSSGVINYGQGLFEGLK 138
Query: 129 AYRKTD--GYILLFRPEENAIRMRNGAERMCMPAPTLEQFVDAVKQTVLANKRWVPPTGK 186
AYR + G +LFRPEENA RM++GAERMCMP+P++EQFV AVKQTVLAN+RWVPP GK
Sbjct: 139 AYRAANQQGSYMLFRPEENARRMQHGAERMCMPSPSVEQFVHAVKQTVLANRRWVPPQGK 198
Query: 187 GSLYIRPLLMGSGAVLGLAPAPEYTFMIFVSPVGNYFKEGLAPINLIIEENFHRAAPGGT 246
G+LYIRPLL+GSG +LGLAPAPEYTF+I+ +PVG YFKEGLAPINL++E++ HRA PGGT
Sbjct: 199 GALYIRPLLIGSGPILGLAPAPEYTFLIYAAPVGTYFKEGLAPINLVVEDSIHRAMPGGT 258
Query: 247 GGVKTIGNYASVLKAQRIAKQKGYSDVLYLDAVHKKYLEEVSSCNIFIVKGNVISTPAIK 306
GGVKTI NYA VLKAQ AK +G++DVLYLDAVHK YLEE SSCN+FIVK V++TPA
Sbjct: 259 GGVKTITNYAPVLKAQMDAKSRGFTDVLYLDAVHKTYLEEASSCNLFIVKDGVVATPATV 318
Query: 307 GTILPGITRKSILEVAQRKGFMVEERLVSVDELLEADEVFCTGTAVVVSPVGSITYLGQR 366
GTILPGITRKS++E+A+ +G+ VEERLVS+D+L+ ADEVFCTGTAVVV+PV S+TY GQR
Sbjct: 319 GTILPGITRKSVIELARDRGYQVEERLVSIDDLVGADEVFCTGTAVVVAPVSSVTYHGQR 378
Query: 367 VEYGNQGVGVVCQQLYTSLTSLQMGHVDDCMGWTVELN 404
E+ G + Q L+T+LTS+QMG +D GWTV ++
Sbjct: 379 YEF-RTGHDTLSQTLHTTLTSIQMGLAEDKKGWTVAID 415
>Os10g0549500 Aminotransferase, class IV family protein
Length = 118
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/110 (82%), Positives = 101/110 (91%), Gaps = 1/110 (0%)
Query: 296 KGNVISTPAIKGTILPGITRKSILEVAQRKGFMVEERLVSVDELLEADEVFCTGTAVVVS 355
+GNVISTPA+KGTILPGITRKSI++VA KGF VEERLVSVDELLEADEVFCTGTAVVVS
Sbjct: 9 QGNVISTPAVKGTILPGITRKSIIDVALSKGFQVEERLVSVDELLEADEVFCTGTAVVVS 68
Query: 356 PVGSITYLGQRVEY-GNQGVGVVCQQLYTSLTSLQMGHVDDCMGWTVELN 404
PVGSITY G+RVEY GN+GVGVV QQLYTSLTSLQMG +D +GWTV+L+
Sbjct: 69 PVGSITYQGKRVEYAGNKGVGVVSQQLYTSLTSLQMGQAEDWLGWTVQLS 118
>AK063664
Length = 355
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 123/271 (45%), Gaps = 15/271 (5%)
Query: 105 FGPIELSPSAGVLNYGQGLFEG-LKAYRKTDGYILLFRPEENAIRMRNGAERMCMPAPTL 163
+G +E+ P L+YG +F+ + + K +FR E R+ + +
Sbjct: 55 YGDLEVRPQIAGLHYGLQVFDHCVISADKATKKPRIFRQECFLSRLAESRDYLHFGKYED 114
Query: 164 EQFVDAVKQTVLANKRWVPPTGKG-SLYIRPLLMGSGAVLGLAPAPEYTFMIFVSPVGNY 222
+ +K+ LA +++ PTG G +L +R ++G L PA + IF +P +
Sbjct: 115 AELTALIKE-YLAAEQFNIPTGPGQALLVRTCIIGDNNSLSAGPADSFRLFIFSTPFDTF 173
Query: 223 FKEGLAPINLIIEENFHRAAPGGTGGVKTIGNYASVLKAQRIAKQKGYSDVLYLDAVHKK 282
+ P+N+ + R+ GGTGGV GNYA+ + + +A+++G+ +L+L V +
Sbjct: 174 AE--TKPLNVKADPTVRRSWAGGTGGVSVGGNYANQIYHETLARKEGFDRILWL--VDNE 229
Query: 283 YLEEVSSCNIFIVKGNV-----ISTPAIKGTILPGITRKSILEVAQRKGFMVEERLVSVD 337
+ N F V N + TP + T + G R +ILE ++ + +
Sbjct: 230 NIATAGDANFFAVYKNASGAHELVTPELGQTSMAGTVRTTILERFGKQARVSDVTAKEFG 289
Query: 338 ELLE---ADEVFCTGTAVVVSPVGSITYLGQ 365
L A E F T + + P+ S++Y G+
Sbjct: 290 AALRSGAAVEAFATSSTCITRPIASMSYNGE 320
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,072,322
Number of extensions: 689824
Number of successful extensions: 1500
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1494
Number of HSP's successfully gapped: 6
Length of query: 405
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 302
Effective length of database: 11,657,759
Effective search space: 3520643218
Effective search space used: 3520643218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)