Os03g0231600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Branched-chain-amino-acid aminotransferase 3, chloroplast precursor (EC 2.6.1.42) (Atbcat-3).
FiT-DB / Search/ Help/ Sample detail
|
Os03g0231600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Branched-chain-amino-acid aminotransferase 3, chloroplast precursor (EC 2.6.1.42) (Atbcat-3).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 323.13 | 0.845 | 9.17 | -0.845 | 4.05 | -2.15 | 0.587 | -2.38 | -1.07 | 5.16 | 20.9 | 1449 | -- | -- |
| 333.11 | 0.85 | 9.11 | -0.39 | 4.01 | -1.83 | 0.581 | -- | -0.98 | 5.16 | 21.1 | 1527 | -- | -- |
| 323.99 | 0.838 | 9.17 | -0.836 | 4.05 | -2.16 | -- | -2.35 | -1.07 | 5.16 | 20.89 | 1449 | -- | -- |
| 333.76 | 0.851 | 9.1 | -0.35 | 4.04 | -1.87 | -- | -- | -0.953 | 5.18 | 21.1 | 1527 | -- | -- |
| 1071.7 | 1.52 | 9.18 | -0.994 | -- | -1.81 | -- | -1.45 | -0.906 | -- | 22.1 | 325 | -- | -- |
| 419.3 | 0.96 | 9.2 | -1.15 | 4.01 | -- | 0.773 | -- | -1.43 | 5.19 | -- | -- | -- | -- |
| 420.8 | 0.961 | 9.21 | -1.15 | 4.02 | -- | -- | -- | -1.43 | 5.19 | -- | -- | -- | -- |
| 686.87 | 1.22 | 9.07 | -0.228 | -- | -2.7 | -- | -- | -0.357 | -- | 25.9 | 325 | -- | -- |
| 336.51 | 0.854 | 9.09 | -- | 4.04 | -1.99 | -- | -- | -0.894 | 5.19 | 21.1 | 1530 | -- | -- |
| 1265.92 | 1.66 | 9.25 | -1 | -- | -- | -- | -- | -1.33 | -- | -- | -- | -- | -- |
| 455.41 | 0.998 | 9.18 | -- | 4 | -- | -- | -- | -1.3 | 5.2 | -- | -- | -- | -- |
| 684.09 | 1.22 | 9.04 | -- | -- | -2.88 | -- | -- | -0.396 | -- | 25.85 | 316 | -- | -- |
| 1292.55 | 1.68 | 9.23 | -- | -- | -- | -- | -- | -1.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 320.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 2 | 321.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 19 | 323.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 26 | 323.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 28 | 323.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 31 | 323.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 51 | 324.83 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 68 | 325.35 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 141 | 327.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 143 | 327.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 297 | 330.16 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 361 | 331.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 389 | 331.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 421 | 331.55 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 424 | 331.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 455 | 331.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 484 | 332.08 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 492 | 332.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 523 | 332.49 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 549 | 332.80 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 564 | 332.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 584 | 333.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 603 | 333.43 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 608 | 333.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 722 | 334.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 21 |
| 755 | 334.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 756 | 334.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 779 | 335.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 807 | 335.34 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 814 | 335.39 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 920 | 336.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 932 | 336.59 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 949 | 336.74 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 23 |