BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0231600 Os03g0231600|AK105963
(415 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0231600 Similar to Branched-chain-amino-acid aminotran... 664 0.0
Os03g0106400 Similar to Branched-chain-amino-acid aminotran... 416 e-116
Os05g0558400 Similar to Branched-chain-amino-acid aminotran... 416 e-116
Os04g0559400 Similar to Branched-chain-amino-acid aminotran... 374 e-104
Os10g0549500 Aminotransferase, class IV family protein 100 4e-21
>Os03g0231600 Similar to Branched-chain-amino-acid aminotransferase 3,
chloroplast precursor (EC 2.6.1.42) (Atbcat-3)
Length = 415
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/404 (81%), Positives = 331/404 (81%)
Query: 12 KRALLPWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSLLQCRWRSSLPQLDSADR 71
KRALLPW WSLLQCRWRSSLPQLDSADR
Sbjct: 12 KRALLPWARDAHHALARALQGCGGGGGLGLRGALPTAGGRWSLLQCRWRSSLPQLDSADR 71
Query: 72 SDEESGGEIDWDNLGFGLTPTDYMYVMRCSLEDGVFSRGELSRYGNIELSPSSGVINYGQ 131
SDEESGGEIDWDNLGFGLTPTDYMYVMRCSLEDGVFSRGELSRYGNIELSPSSGVINYGQ
Sbjct: 72 SDEESGGEIDWDNLGFGLTPTDYMYVMRCSLEDGVFSRGELSRYGNIELSPSSGVINYGQ 131
Query: 132 GLFEGLKAYRAANQQGSYMLFRPEENARRMQHGAERMCMPSPSVEQFVHAVKQTVLANRR 191
GLFEGLKAYRAANQQGSYMLFRPEENARRMQHGAERMCMPSPSVEQFVHAVKQTVLANRR
Sbjct: 132 GLFEGLKAYRAANQQGSYMLFRPEENARRMQHGAERMCMPSPSVEQFVHAVKQTVLANRR 191
Query: 192 WVPPQGKGALYXXXXXXXXXXXXXXXXAPEYTFLIYAAPVGTYFKEGLAPINLVVEDSIH 251
WVPPQGKGALY APEYTFLIYAAPVGTYFKEGLAPINLVVEDSIH
Sbjct: 192 WVPPQGKGALYIRPLLIGSGPILGLAPAPEYTFLIYAAPVGTYFKEGLAPINLVVEDSIH 251
Query: 252 RAMPGGTGGVKTITNYAPVLKAQMDAKSRGFTDVLYLDAVHKTYLEEASSCNLFIVKDGV 311
RAMPGGTGGVKTITNYAPVLKAQMDAKSRGFTDVLYLDAVHKTYLEEASSCNLFIVKDGV
Sbjct: 252 RAMPGGTGGVKTITNYAPVLKAQMDAKSRGFTDVLYLDAVHKTYLEEASSCNLFIVKDGV 311
Query: 312 VATPATVGTILPGITRKSVIELARDRGYQVEERLVSIDDLVGADEVFCTGXXXXXXXXXX 371
VATPATVGTILPGITRKSVIELARDRGYQVEERLVSIDDLVGADEVFCTG
Sbjct: 312 VATPATVGTILPGITRKSVIELARDRGYQVEERLVSIDDLVGADEVFCTGTAVVVAPVSS 371
Query: 372 XXYHGQRYEFRTGHDXXXXXXXXXXXXIQMGLAEDKKGWTVAID 415
YHGQRYEFRTGHD IQMGLAEDKKGWTVAID
Sbjct: 372 VTYHGQRYEFRTGHDTLSQTLHTTLTSIQMGLAEDKKGWTVAID 415
>Os03g0106400 Similar to Branched-chain-amino-acid aminotransferase 5,
chloroplast precursor (EC 2.6.1.42) (Atbcat-5)
Length = 405
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/338 (59%), Positives = 249/338 (73%), Gaps = 4/338 (1%)
Query: 79 EIDWDNLGFGLTPTDYMYVMRCSLEDGVFSRGELSRYGNIELSPSSGVINYGQGLFEGLK 138
++DW+NLGFGL TD+MY+ +C DG FS+GE+ +G IELSPS+GV+NYGQGLFEGLK
Sbjct: 70 DLDWENLGFGLVQTDFMYIAKCG-PDGNFSKGEMVPFGPIELSPSAGVLNYGQGLFEGLK 128
Query: 139 AYRAANQQGSYMLFRPEENARRMQHGAERMCMPSPSVEQFVHAVKQTVLANRRWVPPQGK 198
AYR + G +LFRPEENA RM++GAERMCMP+P++EQFV AVKQTVLAN+RWVPP GK
Sbjct: 129 AYRKTD--GYILLFRPEENAIRMRNGAERMCMPAPTLEQFVDAVKQTVLANKRWVPPTGK 186
Query: 199 GALYXXXXXXXXXXXXXXXXAPEYTFLIYAAPVGTYFKEGLAPINLVVEDSIHRAMPGGT 258
G+LY APEYTF+I+ +PVG YFKEGLAPINL++E++ HRA PGGT
Sbjct: 187 GSLYIRPLLMGSGAVLGLAPAPEYTFMIFVSPVGNYFKEGLAPINLIIEENFHRAAPGGT 246
Query: 259 GGVKTITNYAPVLKAQMDAKSRGFTDVLYLDAVHKTYLEEASSCNLFIVKDGVVATPATV 318
GGVKTI NYA VLKAQ AK +G++DVLYLDAVHK YLEE SSCN+FIVK V++TPA
Sbjct: 247 GGVKTIGNYASVLKAQRIAKQKGYSDVLYLDAVHKKYLEEVSSCNIFIVKGNVISTPAIK 306
Query: 319 GTILPGITRKSVIELARDRGYQVEERLVSIDDLVGADEVFCTGXXXXXXXXXXXXYHGQR 378
GTILPGITRKS++E+A+ +G+ VEERLVS+D+L+ ADEVFCTG Y GQR
Sbjct: 307 GTILPGITRKSILEVAQRKGFMVEERLVSVDELLEADEVFCTGTAVVVSPVGSITYLGQR 366
Query: 379 YEF-RTGHDXXXXXXXXXXXXIQMGLAEDKKGWTVAID 415
E+ G +QMG +D GWTV ++
Sbjct: 367 VEYGNQGVGVVCQQLYTSLTSLQMGHVDDCMGWTVELN 404
>Os05g0558400 Similar to Branched-chain-amino-acid aminotransferase 3,
chloroplast precursor (EC 2.6.1.42) (Atbcat-3)
Length = 409
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/350 (58%), Positives = 247/350 (70%), Gaps = 5/350 (1%)
Query: 68 SADRSDEESGGEIDWDNLGFGLTPTDYMYVMRCSLEDGVFSRGELSRYGNIELSPSSGVI 127
++D + ++DW+NLGFG+ TDYMY+ +C +DG FS GE+ +G I L+PSSGV+
Sbjct: 63 ASDYTKASEVADLDWENLGFGIVQTDYMYITKCG-QDGNFSEGEMIPFGPIALNPSSGVL 121
Query: 128 NYGQGLFEGLKAYRAANQQGSYMLFRPEENARRMQHGAERMCMPSPSVEQFVHAVKQTVL 187
NYGQGLFEGLKAYR + S +LFRPEENA RM+ GAERMCMP+PSVEQFV AVKQTVL
Sbjct: 122 NYGQGLFEGLKAYRTTDD--SILLFRPEENALRMRTGAERMCMPAPSVEQFVDAVKQTVL 179
Query: 188 ANRRWVPPQGKGALYXXXXXXXXXXXXXXXXAPEYTFLIYAAPVGTYFKEGLAPINLVVE 247
AN+RWVPP GKG+LY APEYTF+I+ +PVG YFKEGLAPINL+VE
Sbjct: 180 ANKRWVPPTGKGSLYIRPLLMGSGAVLGLAPAPEYTFIIFVSPVGNYFKEGLAPINLIVE 239
Query: 248 DSIHRAMPGGTGGVKTITNYAPVLKAQMDAKSRGFTDVLYLDAVHKTYLEEASSCNLFIV 307
D HRA PGGTG VKTI NYA VL AQ AK +G++DVLYLDAVHK YLEE SSCN+F+V
Sbjct: 240 DKFHRATPGGTGSVKTIGNYASVLMAQKIAKEKGYSDVLYLDAVHKKYLEEVSSCNIFVV 299
Query: 308 KDGVVATPATVGTILPGITRKSVIELARDRGYQVEERLVSIDDLVGADEVFCTGXXXXXX 367
K V++TPA GTILPGITRKS+I++A +G+QVEERLVS+D+L+ ADEVFCTG
Sbjct: 300 KGNVISTPAVKGTILPGITRKSIIDVALSKGFQVEERLVSVDELLEADEVFCTGTAVVVS 359
Query: 368 XXXXXXYHGQRYEF--RTGHDXXXXXXXXXXXXIQMGLAEDKKGWTVAID 415
Y G+R E+ G +QMG AED WTV +
Sbjct: 360 PVGSITYQGKRVEYAGNKGVGVVSQQLYTSLTSLQMGQAEDWLVWTVQLS 409
>Os04g0559400 Similar to Branched-chain-amino-acid aminotransferase 5,
chloroplast precursor (EC 2.6.1.42) (Atbcat-5)
Length = 410
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/342 (53%), Positives = 238/342 (69%), Gaps = 12/342 (3%)
Query: 79 EIDWDNLGFGLTPTDYMYVMRCSLEDGVFSRGELSRYGNIELSPSSGVINYGQGLFEGLK 138
+ +W+ LGF PTD+MYVMRCS E+GVF++GEL YG IEL+P++GV+NYGQGL EGL+
Sbjct: 76 DFNWETLGFQPVPTDFMYVMRCS-EEGVFTKGELVPYGPIELNPAAGVLNYGQGLLEGLR 134
Query: 139 AYRAANQQGSYMLFRPEENARRMQHGAERMCMPSPSVEQFVHAVKQTVLANRRWVPPQGK 198
A+R + GS +LFRP+ENA RM+ GA+R+CMP+PSVEQF+ A+K T+LAN+RWVPP GK
Sbjct: 135 AHR--KEDGSVLLFRPDENALRMRVGADRLCMPAPSVEQFLEAIKLTILANKRWVPPTGK 192
Query: 199 GALYXXXXXXXXXXXXXXXXAPEYTFLIYAAPVGTYFKEGLAPINLVVEDSIHRAMPGGT 258
G+LY APEYTF+++A PVG YFK+GL+PI+L+ E+ A PGGT
Sbjct: 193 GSLYIRPLLIGSGAILGVAPAPEYTFVVFACPVGHYFKDGLSPISLLTEEEYQCAAPGGT 252
Query: 259 GGVKTITNYAPVLKAQMDAKSRGFTDVLYLDAVHKTYLEEASSCNLFIVKDGVVATPATV 318
G +KTI NYA + A+ AK RG +DVLYLD VHK ++EE SSCN+F+VKD +++TP
Sbjct: 253 GDIKTIGNYASAVYAKERAKERGHSDVLYLDPVHKKFVEELSSCNIFMVKDNIISTPLLT 312
Query: 319 GTILPGITRKSVIELARDRGYQVEERLVSIDDLVGADEVFCTGXXXXXXXXXXXXYHGQR 378
GT+LPGITR+S+IE AR G+QVEE L++ID+L+ ADEVFCTG Y G+R
Sbjct: 313 GTVLPGITRRSIIEYARSLGFQVEECLITIDELLDADEVFCTGTSVVLSSVGCIVYQGRR 372
Query: 379 YE-----FRTGHDXXXXXXXXXXXXIQMGLAEDKKGWTVAID 415
E FRT IQ GL ED GWTV ++
Sbjct: 373 VEYGNQKFRT----VSQQLYSALTAIQKGLVEDSMGWTVQLN 410
>Os10g0549500 Aminotransferase, class IV family protein
Length = 118
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 311 VVATPATVGTILPGITRKSVIELARDRGYQVEERLVSIDDLVGADEVFCTGXXXXXXXXX 370
V++TPA GTILPGITRKS+I++A +G+QVEERLVS+D+L+ ADEVFCTG
Sbjct: 12 VISTPAVKGTILPGITRKSIIDVALSKGFQVEERLVSVDELLEADEVFCTGTAVVVSPVG 71
Query: 371 XXXYHGQRYEF--RTGHDXXXXXXXXXXXXIQMGLAEDKKGWTVAID 415
Y G+R E+ G +QMG AED GWTV +
Sbjct: 72 SITYQGKRVEYAGNKGVGVVSQQLYTSLTSLQMGQAEDWLGWTVQLS 118
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,956,222
Number of extensions: 473285
Number of successful extensions: 1019
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1006
Number of HSP's successfully gapped: 5
Length of query: 415
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 312
Effective length of database: 11,657,759
Effective search space: 3637220808
Effective search space used: 3637220808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)