Os05g0558400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Branched-chain-amino-acid aminotransferase 3, chloroplast precursor (EC 2.6.1.42) (Atbcat-3).
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Os05g0558400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Branched-chain-amino-acid aminotransferase 3, chloroplast precursor (EC 2.6.1.42) (Atbcat-3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.6 | 0.256 | 13.5 | -0.291 | 0.333 | 0.806 | 0.308 | -0.495 | 0.0335 | 21 | 25.32 | 12 | -- | -- |
| 29.7 | 0.254 | 13.4 | -0.236 | 0.328 | 0.772 | 0.341 | -- | 0.0478 | 20.9 | 25.39 | 12 | -- | -- |
| 29.91 | 0.255 | 13.5 | -0.316 | 0.335 | 0.823 | -- | -0.627 | 0.0341 | 21 | 25.43 | 12 | -- | -- |
| 30.07 | 0.255 | 13.4 | -0.247 | 0.332 | 0.773 | -- | -- | 0.0514 | 21 | 25.43 | 10 | -- | -- |
| 33.58 | 0.27 | 13.4 | -0.313 | -- | 0.783 | -- | -0.457 | 0.00876 | -- | 24.23 | 225 | -- | -- |
| 38.37 | 0.29 | 13.4 | -0.127 | 0.434 | -- | 0.505 | -- | 0.0985 | 18.3 | -- | -- | -- | -- |
| 39 | 0.292 | 13.4 | -0.133 | 0.436 | -- | -- | -- | 0.1 | 18.2 | -- | -- | -- | -- |
| 33.7 | 0.27 | 13.4 | -0.265 | -- | 0.737 | -- | -- | 0.0163 | -- | 24.1 | 236 | -- | -- |
| 31.61 | 0.262 | 13.4 | -- | 0.332 | 0.714 | -- | -- | 0.0833 | 20.6 | 25.49 | 10 | -- | -- |
| 48.87 | 0.327 | 13.4 | -0.145 | -- | -- | -- | -- | 0.0907 | -- | -- | -- | -- | -- |
| 39.46 | 0.294 | 13.4 | -- | 0.438 | -- | -- | -- | 0.115 | 18.2 | -- | -- | -- | -- |
| 35.49 | 0.277 | 13.4 | -- | -- | 0.698 | -- | -- | 0.0528 | -- | 24.28 | 234 | -- | -- |
| 49.43 | 0.328 | 13.4 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.96 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 4 | 27.35 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 7 | 27.62 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 31 | 28.44 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 38 | 28.49 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 83 | 28.86 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 120 | 29.11 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 6 |
| 125 | 29.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 9 |
| 159 | 29.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 182 | 29.29 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 19 |
| 190 | 29.31 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 271 | 29.55 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 292 | 29.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 329 | 29.65 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 330 | 29.66 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 366 | 29.72 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 407 | 29.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 434 | 29.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 435 | 29.80 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 529 | 29.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 582 | 29.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 608 | 29.96 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 825 | 30.21 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 2 |
| 955 | 30.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 969 | 30.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 19 |