BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0541100 Os04g0541100|AK107139
(605 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0541100 Similar to Gt-2 553 e-157
Os03g0113500 Similar to Gt-2 177 2e-44
Os02g0648300 Homeodomain-like containing protein 174 1e-43
Os02g0104500 Similar to DNA-binding protein DF1 133 4e-31
>Os04g0541100 Similar to Gt-2
Length = 605
Score = 553 bits (1425), Expect = e-157, Method: Compositional matrix adjust.
Identities = 317/605 (52%), Positives = 317/605 (52%)
Query: 1 KLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFFTELEALHAAAXXXXXX 60
KLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFFTELEALHAAA
Sbjct: 1 KLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFFTELEALHAAAPQTPQP 60
Query: 61 XXXXXXXXXXVTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
VTSS
Sbjct: 61 QQQQQQQLPPVTSSAPAMHAFAPPVPAPPPMSAMPPPPGPIQPAPISSAAPAVPLELPPQ 120
Query: 121 XXXXXQGLXXXXXXXXXXXXXXXXXXMTAETGGSQDXXXXXXXXXXXXXXXTFFEGLIKQ 180
QGL MTAETGGSQD TFFEGLIKQ
Sbjct: 121 PPINLQGLSFSSMSGSESDDESEDDEMTAETGGSQDRLGKRKRGAGGKRLATFFEGLIKQ 180
Query: 181 VVDRQEEMQRRFLXXXXXXXXXXXXXXXXXXXXXVARLNXXXXXXXXXXXXXXXXXXXII 240
VVDRQEEMQRRFL VARLN II
Sbjct: 181 VVDRQEEMQRRFLETMEKREAERTAREEAWRRQEVARLNREQEQLAQERAAAASRDAAII 240
Query: 241 SFLQRIGGQSVQVPPAATVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
SFLQRIGGQSVQVPPAATVI
Sbjct: 241 SFLQRIGGQSVQVPPAATVIQMPTPVQLQTPPPVKQPARQHQPQPTPPPPQAAPIPAAPL 300
Query: 301 XXXXXXXXHKETIHHEAVTPRRAPPTSGSSLELVPAAEQHVEXXXXXXXXXXXXXXRWPK 360
HKETIHHEAVTPRRAPPTSGSSLELVPAAEQHVE RWPK
Sbjct: 301 QQQPPQPQHKETIHHEAVTPRRAPPTSGSSLELVPAAEQHVESGLGGGEGGSASSSRWPK 360
Query: 361 TEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKV 420
TEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKV
Sbjct: 361 TEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYFKKV 420
Query: 421 KESNKKRPEDSKTCPYFHQLDVIYRRKHLTXXXXXXXXXXXXXXXXIEHQNPNRHEIEXX 480
KESNKKRPEDSKTCPYFHQLDVIYRRKHLT IEHQNPNRHEIE
Sbjct: 421 KESNKKRPEDSKTCPYFHQLDVIYRRKHLTGGGGGGASAANVAATAIEHQNPNRHEIEGK 480
Query: 481 XXXXXXXXXXXXXXXAQVPTSNGDTAPTTATFDVDSGMKKPEDIVRELSEQPPREFXXXX 540
AQVPTSNGDTAPTTATFDVDSGMKKPEDIVRELSEQPPREF
Sbjct: 481 NINDNDKRKNGGGGGAQVPTSNGDTAPTTATFDVDSGMKKPEDIVRELSEQPPREFTTDE 540
Query: 541 XXXXXXXXXXXXXXXXXXXXXKMQYRIQFQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXF 600
KMQYRIQFQR F
Sbjct: 541 TDSDDMGDDYTDDGEEGEDDGKMQYRIQFQRPNPGGANTAPPPATTPASAVPTSTPTSTF 600
Query: 601 LAMVQ 605
LAMVQ
Sbjct: 601 LAMVQ 605
>Os03g0113500 Similar to Gt-2
Length = 524
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 85/91 (93%)
Query: 357 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKY 416
RWPK EV ALIQLR EL+ RYQ++GPKGPLWE+IS+GMRRLGY+RSSKRCKEKWENINKY
Sbjct: 335 RWPKAEVHALIQLRTELETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKY 394
Query: 417 FKKVKESNKKRPEDSKTCPYFHQLDVIYRRK 447
FKKVKESNKKRPEDSKTCPY+HQLD +YR K
Sbjct: 395 FKKVKESNKKRPEDSKTCPYYHQLDALYRTK 425
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/52 (86%), Positives = 49/52 (94%)
Query: 1 KLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFFTELEALHA 52
KLAE+GYKRSAKKC+EKFENV KYYKRTK+GRAGR DGK+YRFFTELEALH
Sbjct: 14 KLAEMGYKRSAKKCREKFENVDKYYKRTKDGRAGRGDGKTYRFFTELEALHG 65
>Os02g0648300 Homeodomain-like containing protein
Length = 442
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 75/94 (79%), Positives = 85/94 (90%)
Query: 357 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKY 416
RWPK EVQALI LRME + +Y + GPKGPLWEEI++GM+R+GYNRS+KRCKEKWENINKY
Sbjct: 134 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKY 193
Query: 417 FKKVKESNKKRPEDSKTCPYFHQLDVIYRRKHLT 450
FKKVKESNK+RPEDSKTCPYFHQLD IYR+KH
Sbjct: 194 FKKVKESNKRRPEDSKTCPYFHQLDAIYRKKHFA 227
>Os02g0104500 Similar to DNA-binding protein DF1
Length = 370
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 71/88 (80%)
Query: 357 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKY 416
RWPK EV+ALI++R L+ R+QE G KGPLWEE+S+ M GY R++KRCKEKWENINKY
Sbjct: 184 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKY 243
Query: 417 FKKVKESNKKRPEDSKTCPYFHQLDVIY 444
F+K KES KKRP +KTCPYF +LD +Y
Sbjct: 244 FRKAKESGKKRPAHAKTCPYFDELDRLY 271
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,697,326
Number of extensions: 295484
Number of successful extensions: 1033
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1029
Number of HSP's successfully gapped: 7
Length of query: 605
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 498
Effective length of database: 11,448,903
Effective search space: 5701553694
Effective search space used: 5701553694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)