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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0541100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Gt-2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.41 (0.042) R2 : 0.465
β1 : -1.93 (0.159) R2dD : 0.198 R2D : 0.104
β2 : 1.03 (0.101) R2dC : 0.129 R2C : 0.183
β3 : 1.37 (0.123) R2dE : 0.174 R2E : 0.144
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0215 (0.0924) R2dN8 : 8.81e-05 R2N8 : -0.00354
σ : 0.778
deviance : 278.93
__
_____
C
peak time of C : 23.1
E
wheather : temperature
threshold : 27
memory length : 2615
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.54 0.787 5.5 -3.35 1.09 2 0.445 -7.84 0.301 23.5 30 1258 -- --
286.6 0.788 5.4 -1.88 1.2 1.27 0.508 -- 0.168 0.0773 29.4 2572 -- --
281.38 0.781 5.5 -3.33 1.09 1.99 -- -7.65 0.304 23.4 30 1256 -- --
278.93 0.778 5.41 -1.93 1.03 1.37 -- -- -0.0215 23.1 27 2615 -- --
347.73 0.869 5.46 -3.23 -- 2.33 -- -7.57 0.298 -- 29.9 1139 -- --
352.05 0.88 5.34 -1.4 1.27 -- 0.6 -- 0.266 23.7 -- -- -- --
353.59 0.881 5.35 -1.43 1.27 -- -- -- 0.264 23.6 -- -- -- --
313.01 0.824 5.46 -1.97 -- 2.15 -- -- -0.439 -- 25.7 926 -- --
370 0.896 5.36 -- 1.03 0.999 -- -- 0.204 23.2 26.9 2344 -- --
455.19 0.997 5.32 -1.39 -- -- -- -- 0.279 -- -- -- -- --
407.27 0.944 5.31 -- 1.26 -- -- -- 0.423 23.6 -- -- -- --
408.02 0.941 5.39 -- -- 1.56 -- -- -0.0509 -- 25.61 895 -- --
506.26 1.05 5.28 -- -- -- -- -- 0.433 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 271.22 radiation 1.0 1440 < th dose dependent rect. 18 11
2 271.41 radiation 1.0 1440 < th dose dependent rect. 18 7
3 271.47 radiation 1.0 1440 < th dose dependent rect. 18 1
12 273.57 temperature 25.0 720 > th dose dependent sin 14 NA
13 273.79 temperature 25.0 720 > th dose dependent rect. 17 2
16 274.29 temperature 25.0 720 > th dose dependent rect. 15 8
18 274.42 temperature 25.0 720 > th dose dependent rect. 17 16
19 274.43 temperature 25.0 14400 > th dose independent rect. 4 1
21 274.44 temperature 25.0 14400 > th dose dependent rect. 4 2
26 274.77 temperature 20.0 720 > th dose dependent rect. 13 10
51 276.00 temperature 25.0 720 > th dose dependent rect. 15 14
64 276.48 radiation 40.0 1440 > th dose dependent rect. 13 21
77 276.86 radiation 1.0 14400 < th dose dependent rect. 18 1
82 276.90 temperature 25.0 720 > th dose dependent rect. 13 16
84 276.94 radiation 1.0 14400 < th dose dependent rect. 18 5
89 276.99 radiation 1.0 14400 < th dose dependent rect. 18 11
92 277.17 temperature 25.0 14400 < th dose independent rect. 4 1
97 277.36 radiation 30.0 14400 > th dose independent rect. 16 16
100 277.42 radiation 1.0 43200 < th dose dependent rect. 4 1
124 278.07 radiation 40.0 1440 > th dose dependent rect. 13 3
150 278.52 radiation 40.0 1440 > th dose dependent sin 13 NA
156 278.72 temperature 20.0 720 > th dose dependent rect. 11 12
161 278.80 radiation 1.0 720 > th dose dependent rect. 17 13
174 279.13 temperature 25.0 720 < th dose independent rect. 12 12
201 280.24 radiation 30.0 14400 > th dose independent rect. 7 1
222 280.42 radiation 1.0 43200 < th dose dependent rect. 21 8
229 280.58 radiation 10.0 14400 > th dose independent rect. 17 13
233 280.70 temperature 25.0 4320 < th dose independent rect. 8 1
256 281.12 radiation 1.0 720 > th dose independent rect. 17 13
264 281.33 radiation 30.0 14400 > th dose independent rect. 15 2
279 281.34 wind 7.0 43200 < th dose independent rect. 4 10
280 281.34 temperature 30.0 1440 > th dose independent rect. 15 23
283 281.39 temperature 25.0 720 > th dose independent rect. 13 11
284 281.39 radiation 20.0 14400 < th dose dependent rect. 16 3
285 281.40 radiation 20.0 14400 < th dose dependent rect. 16 9
289 281.41 radiation 20.0 14400 < th dose dependent rect. 16 11
290 281.41 radiation 20.0 14400 < th dose dependent rect. 16 13
298 281.45 radiation 40.0 14400 < th dose dependent rect. 16 3
299 281.45 radiation 40.0 14400 < th dose dependent rect. 16 9
303 281.47 radiation 40.0 14400 < th dose dependent rect. 16 11
309 281.49 radiation 40.0 14400 < th dose dependent rect. 16 7
327 281.57 temperature 30.0 720 < th dose dependent rect. 12 11
330 281.59 wind 7.0 43200 < th dose independent rect. 8 6
332 281.60 radiation 1.0 14400 > th dose dependent rect. 16 3
366 281.70 wind 5.0 43200 > th dose dependent rect. 10 3
369 281.71 radiation 1.0 14400 > th dose independent rect. 18 1
390 281.74 wind 7.0 43200 < th dose independent rect. 12 1
405 281.76 wind 7.0 43200 < th dose independent rect. 10 3
415 281.80 temperature 25.0 720 > th dose independent sin 19 NA
416 281.81 temperature 30.0 1440 > th dose independent rect. 11 3
418 281.84 wind 5.0 43200 > th dose dependent rect. 12 1
437 281.89 wind 7.0 43200 > th dose independent rect. 4 10
454 281.98 wind 5.0 43200 > th dose dependent rect. 9 5
455 282.00 temperature 30.0 1440 < th dose independent rect. 15 23
469 282.05 wind 7.0 43200 > th dose independent rect. 8 6
490 282.25 radiation 1.0 14400 < th dose independent rect. 18 7
491 282.27 radiation 1.0 14400 < th dose independent rect. 18 1
493 282.27 wind 7.0 43200 < th dose dependent rect. 8 2
496 282.28 temperature 25.0 14400 > th dose independent rect. 17 13
506 282.33 wind 5.0 43200 > th dose dependent rect. 5 9
508 282.35 radiation 1.0 14400 < th dose independent rect. 18 5
516 282.37 humidity 90.0 43200 < th dose independent rect. 10 1
517 282.37 wind 7.0 43200 > th dose independent rect. 10 3
518 282.37 temperature 25.0 720 > th dose independent rect. 8 16
553 282.43 temperature 30.0 1440 > th dose independent rect. 9 10
580 282.50 radiation 30.0 14400 < th dose independent rect. 15 10
581 282.51 radiation 30.0 14400 < th dose independent rect. 15 4
614 282.52 radiation 30.0 14400 < th dose independent rect. 15 12
620 282.54 radiation 30.0 14400 < th dose independent rect. 15 2
630 282.57 temperature 25.0 720 > th dose independent rect. 15 5
635 282.60 precipitation 0.1 43200 > th dose dependent rect. 4 14
659 282.69 wind 7.0 43200 > th dose independent rect. 10 1
688 282.79 temperature 30.0 1440 < th dose independent rect. 11 3
699 282.85 radiation 10.0 1440 > th dose dependent rect. 16 1
711 282.90 wind 7.0 43200 < th dose independent rect. 10 1
724 283.00 temperature 30.0 1440 > th dose independent sin 16 NA
731 283.01 temperature 10.0 720 > th dose dependent rect. 9 16
732 283.02 temperature 25.0 14400 > th dose independent rect. 11 19
736 283.04 temperature 30.0 1440 > th dose dependent rect. 15 1
769 283.14 temperature 25.0 14400 < th dose independent rect. 17 13
779 283.21 temperature 30.0 1440 > th dose dependent rect. 13 1
799 283.23 temperature 10.0 720 > th dose dependent rect. 11 9
800 283.24 humidity 90.0 43200 > th dose independent rect. 9 2
805 283.27 temperature 30.0 1440 < th dose independent rect. 9 23
806 283.28 temperature 30.0 1440 > th dose independent no NA NA
807 283.28 temperature 30.0 1440 < th dose independent rect. 9 10
911 283.30 temperature 30.0 1440 < th dose independent rect. 9 20
966 283.40 radiation 1.0 720 > th dose independent rect. 17 2
978 283.42 radiation 10.0 14400 < th dose independent rect. 16 1
979 283.43 wind 3.0 43200 < th dose independent rect. 3 1
981 283.44 temperature 25.0 14400 > th dose independent sin 12 NA
993 283.48 temperature 25.0 14400 < th dose independent rect. 11 19
997 283.49 temperature 30.0 1440 > th dose dependent no NA NA