Os02g0104500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA-binding protein DF1.
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Os02g0104500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA-binding protein DF1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 689.4 | 1.23 | 7.55 | -5.62 | 1.9 | 5.25 | -0.722 | -2.52 | -1.36 | 23 | 20.6 | 5026 | 16.9 | 8.52 |
| 678.71 | 1.21 | 7.59 | -5.98 | 1.94 | 6.85 | -1.39 | -- | -1.6 | 21.7 | 16.35 | 4807 | 20.9 | 4.15 |
| 690.38 | 1.22 | 7.55 | -5.55 | 1.96 | 5.21 | -- | -2.62 | -1.37 | 23 | 20.71 | 4995 | 17.4 | 8.17 |
| 680.58 | 1.22 | 7.59 | -5.93 | 1.75 | 6.82 | -- | -- | -1.58 | 22 | 16.43 | 4764 | 21.3 | 3.27 |
| 755.05 | 1.28 | 7.48 | -6.16 | -- | 7.65 | -- | -1.87 | -1.23 | -- | 8.223 | 5068 | 14.6 | 7.63 |
| 1476.6 | 1.8 | 7.21 | -2.93 | 2.63 | -- | 0.0443 | -- | -0.0645 | 0.404 | -- | -- | -- | -- |
| 1476.61 | 1.8 | 7.21 | -2.93 | 2.63 | -- | -- | -- | -0.0647 | 0.402 | -- | -- | -- | -- |
| 741.28 | 1.27 | 7.44 | -5.68 | -- | 7.85 | -- | -- | -1.18 | -- | 8.347 | 5008 | 15.5 | 7 |
| 1245.79 | 1.64 | 7.43 | -- | 2.03 | 4.73 | -- | -- | -0.796 | 21.4 | 22.11 | 3291 | 21.9 | 3.93 |
| 1909.89 | 2.04 | 7.16 | -2.85 | -- | -- | -- | -- | -0.0222 | -- | -- | -- | -- | -- |
| 1703.62 | 1.93 | 7.13 | -- | 2.58 | -- | -- | -- | 0.262 | 0.343 | -- | -- | -- | -- |
| 1369.02 | 1.72 | 7.3 | -- | -- | 5.04 | -- | -- | -0.549 | -- | 22.49 | 3532 | 16.1 | 6.66 |
| 2123.51 | 2.15 | 7.08 | -- | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 735.50 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 737.13 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 9 |
| 8 | 738.67 | temperature | 20 | 4320 | > th | dose dependent | sin | 15 | NA |
| 9 | 738.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 19 |
| 11 | 738.83 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 20 |
| 25 | 739.45 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 13 |
| 34 | 739.68 | temperature | 20 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 116 | 743.33 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 118 | 743.37 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 23 |
| 121 | 743.49 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 126 | 743.61 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 150 | 744.21 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 23 |
| 151 | 744.24 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 153 | 744.26 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 195 | 745.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 246 | 747.47 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 253 | 747.69 | temperature | 10 | 4320 | > th | dose dependent | rect. | 16 | 9 |
| 254 | 747.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 16 | 7 |
| 263 | 748.37 | temperature | 10 | 4320 | > th | dose dependent | rect. | 16 | 19 |
| 276 | 748.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 21 |
| 307 | 749.42 | temperature | 10 | 4320 | > th | dose dependent | sin | 16 | NA |
| 315 | 749.64 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 13 |
| 344 | 750.20 | temperature | 10 | 4320 | > th | dose dependent | rect. | 16 | 22 |
| 361 | 750.42 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 383 | 750.62 | temperature | 25 | 14400 | < th | dose independent | sin | 14 | NA |
| 385 | 750.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 410 | 750.91 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 7 |
| 434 | 751.18 | temperature | 25 | 14400 | < th | dose independent | rect. | 15 | 14 |
| 437 | 751.21 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 444 | 751.29 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 483 | 751.59 | temperature | 10 | 4320 | > th | dose dependent | rect. | 4 | 23 |
| 485 | 751.60 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 18 |
| 510 | 751.88 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 514 | 751.89 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 23 |
| 515 | 751.91 | temperature | 10 | 4320 | > th | dose dependent | rect. | 2 | 23 |
| 516 | 751.93 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 579 | 752.37 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 624 | 752.79 | temperature | 25 | 14400 | > th | dose independent | sin | 14 | NA |
| 739 | 753.61 | temperature | 25 | 14400 | > th | dose independent | rect. | 15 | 14 |
| 783 | 753.91 | temperature | 20 | 1440 | > th | dose dependent | sin | 3 | NA |
| 835 | 754.30 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 19 |
| 945 | 755.30 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 995 | 755.72 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 21 |