BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0104500 Os02g0104500|AK120063
         (370 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0104500  Similar to DNA-binding protein DF1                  410   e-115
Os04g0541100  Similar to Gt-2                                     133   2e-31
Os03g0113500  Similar to Gt-2                                     132   3e-31
Os02g0648300  Homeodomain-like containing protein                 131   6e-31

>Os02g0104500 Similar to DNA-binding protein DF1
          Length = 370

 Score =  410 bits (1053), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/311 (69%), Positives = 216/311 (69%)

Query: 19  HLNTSETSAGEDAHAVVXXXXXXXXXSGADAAXXXXXXXXQEQLSASASFFERLVQRLME 78
           HLNTSETSAGEDAHAVV         SGADAA        QEQLSASASFFERLVQRLME
Sbjct: 19  HLNTSETSAGEDAHAVVQPQPQTQQPSGADAARRKRKRRRQEQLSASASFFERLVQRLME 78

Query: 79  HQESLHRQFLDTMXXXXXXXXXXXXXXXXXXXDKFXXXXXXXXXXXXXXXXXXXXXXXYL 138
           HQESLHRQFLDTM                   DKF                       YL
Sbjct: 79  HQESLHRQFLDTMERRERERAARDEAWRRQEADKFAREAAARAQDRASAAARESAIIAYL 138

Query: 139 EKISGETITLXXXXXXXXXXXDEQDGVGKEVVAYDGEGSLQLSSSRWPKHEVEALIRVRT 198
           EKISGETITL           DEQDGVGKEVVAYDGEGSLQLSSSRWPKHEVEALIRVRT
Sbjct: 139 EKISGETITLPPPAANPAPGADEQDGVGKEVVAYDGEGSLQLSSSRWPKHEVEALIRVRT 198

Query: 199 GLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKYFRKAKESGKKRPAHA 258
           GLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKYFRKAKESGKKRPAHA
Sbjct: 199 GLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKYFRKAKESGKKRPAHA 258

Query: 259 KTCPYFDELDRLYSRXXXXXXXXXXXXXXXXXXXXXXXXXLLDAVVKYPDVRCAPPGFPF 318
           KTCPYFDELDRLYSR                         LLDAVVKYPDVRCAPPGFPF
Sbjct: 259 KTCPYFDELDRLYSRSGSGGGGGSSSAGGNGGEEAKGSSELLDAVVKYPDVRCAPPGFPF 318

Query: 319 DGEQNEEGRTK 329
           DGEQNEEGRTK
Sbjct: 319 DGEQNEEGRTK 329



>Os04g0541100 Similar to Gt-2
          Length = 605

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 59/90 (65%), Positives = 72/90 (80%)

Query: 184 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKY 243
           RWPK EV+ALI++R  L+ R+QE G KGPLWEE+S+ M   GY R++KRCKEKWENINKY
Sbjct: 357 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKY 416

Query: 244 FRKAKESGKKRPAHAKTCPYFDELDRLYSR 273
           F+K KES KKRP  +KTCPYF +LD +Y R
Sbjct: 417 FKKVKESNKKRPEDSKTCPYFHQLDVIYRR 446



>Os03g0113500 Similar to Gt-2
          Length = 524

 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 71/88 (80%)

Query: 184 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKY 243
           RWPK EV ALI++RT LE R+Q+ G KGPLWE++SA M   GY R++KRCKEKWENINKY
Sbjct: 335 RWPKAEVHALIQLRTELETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKY 394

Query: 244 FRKAKESGKKRPAHAKTCPYFDELDRLY 271
           F+K KES KKRP  +KTCPY+ +LD LY
Sbjct: 395 FKKVKESNKKRPEDSKTCPYYHQLDALY 422



>Os02g0648300 Homeodomain-like containing protein
          Length = 442

 Score =  131 bits (330), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 76/100 (76%)

Query: 174 GEGSLQLSSSRWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRC 233
           G+GS   + SRWPK EV+ALI +R   E+++ + G KGPLWEE++A M   GY R+AKRC
Sbjct: 124 GDGSGTTAPSRWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRC 183

Query: 234 KEKWENINKYFRKAKESGKKRPAHAKTCPYFDELDRLYSR 273
           KEKWENINKYF+K KES K+RP  +KTCPYF +LD +Y +
Sbjct: 184 KEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDAIYRK 223



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,379,250
Number of extensions: 218978
Number of successful extensions: 500
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 498
Number of HSP's successfully gapped: 4
Length of query: 370
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 268
Effective length of database: 11,709,973
Effective search space: 3138272764
Effective search space used: 3138272764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)