Os02g0648300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0648300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Homeodomain-like containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 246.48 | 0.738 | 6.96 | -3.38 | 2.08 | 2.96 | 1.58 | 0.927 | -1.45 | 3.6 | 17.05 | 1614 | 16.2 | 7.18 |
| 246.06 | 0.731 | 6.96 | -3.43 | 2.14 | 3.36 | 1.7 | -- | -1.42 | 3.93 | 16.12 | 1657 | 15.8 | 6.92 |
| 252.49 | 0.74 | 6.96 | -3.3 | 2.06 | 3.31 | -- | 1.54 | -1.43 | 3.89 | 17.14 | 1669 | 16.2 | 6.58 |
| 253.17 | 0.741 | 6.99 | -3.54 | 2.18 | 3.44 | -- | -- | -1.48 | 3.94 | 15.48 | 1654 | 15.9 | 6.95 |
| 270.07 | 0.765 | 6.99 | -3.35 | -- | 3.43 | -- | 1.36 | -1.39 | -- | 10.44 | 2209 | 16.6 | 7.67 |
| 405.8 | 0.944 | 6.89 | -2.73 | 2.13 | -- | 1.62 | -- | -0.979 | 2.59 | -- | -- | -- | -- |
| 415.1 | 0.954 | 6.89 | -2.78 | 2.14 | -- | -- | -- | -0.988 | 2.62 | -- | -- | -- | -- |
| 259.1 | 0.75 | 7.01 | -3.65 | -- | 3.93 | -- | -- | -1.52 | -- | 7.227 | 2359 | 15.6 | 7.03 |
| 552.73 | 1.09 | 6.82 | -- | 2.26 | 2.25 | -- | -- | -0.888 | 3.42 | 16.74 | 1679 | 16.6 | 3.07 |
| 683.06 | 1.22 | 6.88 | -2.69 | -- | -- | -- | -- | -0.934 | -- | -- | -- | -- | -- |
| 618.27 | 1.16 | 6.82 | -- | 2.09 | -- | -- | -- | -0.679 | 2.6 | -- | -- | -- | -- |
| 565.81 | 1.11 | 6.87 | -- | -- | 3.01 | -- | -- | -0.958 | -- | 0.1533 | 2351 | 16.5 | 5.07 |
| 873.29 | 1.38 | 6.81 | -- | -- | -- | -- | -- | -0.637 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 264.73 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 30 | 266.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 93 | 268.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 94 | 268.42 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 362 | 271.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 365 | 272.01 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 375 | 272.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 424 | 272.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 734 | 274.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 17 |
| 824 | 275.24 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 942 | 276.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 946 | 276.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |