BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0648300 Os02g0648300|015-041-D07
         (442 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0648300  Homeodomain-like containing protein                 630   0.0  
Os04g0541100  Similar to Gt-2                                     181   1e-45
Os03g0113500  Similar to Gt-2                                     166   3e-41
Os02g0104500  Similar to DNA-binding protein DF1                  126   4e-29

>Os02g0648300 Homeodomain-like containing protein
          Length = 442

 Score =  630 bits (1624), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/442 (73%), Positives = 323/442 (73%)

Query: 1   MAMFEGMMRQVTEKQDAMQRVFLETLXXXXXXXXXXXXXXXXXXVARINREREQLSKERX 60
           MAMFEGMMRQVTEKQDAMQRVFLETL                  VARINREREQLSKER 
Sbjct: 1   MAMFEGMMRQVTEKQDAMQRVFLETLEKWEAERTEREEAWRRKEVARINREREQLSKERA 60

Query: 61  XXXXXXXXXXXFLQRVGGAGGEPVRLSPSSXXXXXXXXXXXGLQLVPVPXXXXXXXXXXX 120
                      FLQRVGGAGGEPVRLSPSS           GLQLVPVP           
Sbjct: 61  AAASRDAALIAFLQRVGGAGGEPVRLSPSSAGATRHDAAAAGLQLVPVPAPRAKAEDAWA 120

Query: 121 XXXXXXXXXXXXXRWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSA 180
                        RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSA
Sbjct: 121 AAGGDGSGTTAPSRWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSA 180

Query: 181 KRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDAIYRKKHFAXXXXXXXXVTIAA 240
           KRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDAIYRKKHFA        VTIAA
Sbjct: 181 KRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDAIYRKKHFAGRGGGGGGVTIAA 240

Query: 241 SHSSLAIVTVSEQDNPSQRELEGKSSNDVGNVQLAVPLLVHNAPDKVNHLIQVSLSFKLI 300
           SHSSLAIVTVSEQDNPSQRELEGKSSNDVGNVQLAVPLLVHNAPDKVNHLIQVSLSFKLI
Sbjct: 241 SHSSLAIVTVSEQDNPSQRELEGKSSNDVGNVQLAVPLLVHNAPDKVNHLIQVSLSFKLI 300

Query: 301 ARELIKFVSCTEGGRLRRRTKCHSSSGGDGXXXXXXXXXXXXXXXXXXXXXXXXPEANCG 360
           ARELIKFVSCTEGGRLRRRTKCHSSSGGDG                        PEANCG
Sbjct: 301 ARELIKFVSCTEGGRLRRRTKCHSSSGGDGQRRDVWRIHRRWRRRRQNAVQNRVPEANCG 360

Query: 361 XXXXXXXXXXAGDNCGSDEFSPNQQHQLPCXXXXXXXXXXXXLKKARQASPSSFSVQEGH 420
                     AGDNCGSDEFSPNQQHQLPC            LKKARQASPSSFSVQEGH
Sbjct: 361 RRRRRQRRTRAGDNCGSDEFSPNQQHQLPCGSVGGSARRVRGLKKARQASPSSFSVQEGH 420

Query: 421 NCPIILFQLFCCDVGNIPYTIC 442
           NCPIILFQLFCCDVGNIPYTIC
Sbjct: 421 NCPIILFQLFCCDVGNIPYTIC 442



>Os04g0541100 Similar to Gt-2
          Length = 605

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/135 (62%), Positives = 102/135 (75%), Gaps = 7/135 (5%)

Query: 134 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKY 193
           RWPK EVQALI LRME + +Y + GPKGPLWEEI++GM+R+GYNRS+KRCKEKWENINKY
Sbjct: 357 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKY 416

Query: 194 FKKVKESNKRRPEDSKTCPYFHQLDAIYRKKHFAXXXXXXXXVTIAASHSSLAIVTVSEQ 253
           FKKVKESNK+RPEDSKTCPYFHQLD IYR+KH               + ++    T  E 
Sbjct: 417 FKKVKESNKKRPEDSKTCPYFHQLDVIYRRKHLT-------GGGGGGASAANVAATAIEH 469

Query: 254 DNPSQRELEGKSSND 268
            NP++ E+EGK+ ND
Sbjct: 470 QNPNRHEIEGKNIND 484



>Os03g0113500 Similar to Gt-2
          Length = 524

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 72/91 (79%), Positives = 82/91 (90%)

Query: 134 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKY 193
           RWPK EV ALI LR E E +Y D GPKGPLWE+I+AGM+R+GY+RS+KRCKEKWENINKY
Sbjct: 335 RWPKAEVHALIQLRTELETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKY 394

Query: 194 FKKVKESNKRRPEDSKTCPYFHQLDAIYRKK 224
           FKKVKESNK+RPEDSKTCPY+HQLDA+YR K
Sbjct: 395 FKKVKESNKKRPEDSKTCPYYHQLDALYRTK 425



>Os02g0104500 Similar to DNA-binding protein DF1
          Length = 370

 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 69/88 (78%)

Query: 134 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKY 193
           RWPK EV+ALI +R   E+++ + G KGPLWEE++A M   GY R+AKRCKEKWENINKY
Sbjct: 184 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKY 243

Query: 194 FKKVKESNKRRPEDSKTCPYFHQLDAIY 221
           F+K KES K+RP  +KTCPYF +LD +Y
Sbjct: 244 FRKAKESGKKRPAHAKTCPYFDELDRLY 271



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,082,747
Number of extensions: 354115
Number of successful extensions: 881
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 4
Length of query: 442
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 338
Effective length of database: 11,605,545
Effective search space: 3922674210
Effective search space used: 3922674210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)