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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0113500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Gt-2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.3 (0.0477) R2 : 0.863
β1 : -3.35 (0.176) R2dD : 0.114 R2D : 0.0594
β2 : 3.16 (0.143) R2dC : 0.225 R2C : 0.507
β3 : 3.93 (0.162) R2dE : 0.274 R2E : 0.532
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.598 (0.102) R2dN8 : 0.0138 R2N8 : -0.00681
σ : 0.892
deviance : 367.07
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_____
C
peak time of C : 1.82
E
wheather : temperature
threshold : 7.243
memory length : 79
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.3
open length of G : 14.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
366.42 0.899 7.29 -3.28 3.24 3.9 0.213 0.657 -0.587 1.83 7.791 84 15.2 14.4
366.26 0.891 7.28 -3.31 3.21 3.88 0.505 -- -0.568 1.77 7.756 79 15.3 14.4
365.66 0.891 7.3 -3.25 3.21 3.86 -- 0.885 -0.584 1.78 7.19 79 15.3 14.4
367.07 0.892 7.3 -3.35 3.16 3.93 -- -- -0.598 1.82 7.243 79 15.3 14.3
457.69 0.996 7.31 -3.32 -- 6.01 -- 0.309 -0.734 -- -13.17 312 14.5 14.1
582.71 1.13 7.35 -2.88 5.49 -- 1.01 -- -0.495 0.262 -- -- -- --
587.08 1.13 7.35 -2.92 5.49 -- -- -- -0.5 0.267 -- -- -- --
444.05 0.981 7.33 -3.19 -- 6.2 -- -- -0.805 -- -4.651 398 14.1 13.9
652.75 1.19 7.23 -- 3.19 3.31 -- -- -0.175 1.39 3.938 73 15.4 14.4
2483.54 2.33 7.24 -2.74 -- -- -- -- -0.415 -- -- -- -- --
811.8 1.33 7.28 -- 5.45 -- -- -- -0.175 0.239 -- -- -- --
730.26 1.26 7.21 -- -- 5.13 -- -- -0.197 -- -55.25 255 15.3 13.4
2681.39 2.42 7.17 -- -- -- -- -- -0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 383.73 temperature 20.0 30 > th dose independent rect. 14 16
7 389.56 temperature 10.0 90 > th dose dependent rect. 15 14
8 391.02 temperature 10.0 10 > th dose dependent rect. 16 14
10 391.72 temperature 10.0 270 > th dose dependent rect. 13 15
42 406.67 radiation 1.0 90 > th dose independent rect. 4 11
65 412.00 temperature 20.0 30 > th dose independent rect. 1 5
67 412.78 temperature 30.0 30 < th dose dependent rect. 6 20
74 414.50 humidity 80.0 30 > th dose dependent rect. 24 6
75 414.59 radiation 1.0 90 > th dose independent sin 4 NA
78 415.58 temperature 30.0 90 < th dose dependent rect. 17 9
79 415.59 temperature 30.0 10 < th dose dependent rect. 17 9
82 416.44 temperature 20.0 270 > th dose independent rect. 1 2
90 417.97 temperature 30.0 270 < th dose dependent rect. 15 9
91 418.08 temperature 20.0 270 > th dose independent rect. 23 6
94 418.61 radiation 1.0 90 < th dose independent rect. 1 7
114 420.40 temperature 30.0 10 < th dose dependent rect. 19 7
115 420.56 radiation 1.0 90 < th dose independent sin 4 NA
119 420.70 temperature 20.0 270 > th dose independent rect. 24 4
127 421.88 humidity 80.0 10 > th dose independent rect. 2 4
165 424.66 radiation 20.0 270 < th dose dependent rect. 14 10
175 425.30 humidity 80.0 270 > th dose independent rect. 1 2
208 427.13 radiation 1.0 90 < th dose dependent sin 3 NA
216 427.85 humidity 80.0 10 > th dose dependent rect. 24 8
217 427.90 temperature 20.0 270 > th dose independent rect. 23 20
224 428.42 radiation 40.0 10 < th dose dependent rect. 14 16
227 428.48 humidity 70.0 270 > th dose dependent rect. 1 2
230 428.60 atmosphere 1010.0 10 < th dose independent rect. 15 15
249 429.75 temperature 10.0 30 > th dose dependent rect. 1 5
253 429.88 temperature 30.0 10 < th dose dependent rect. 14 12
260 430.19 temperature 10.0 270 > th dose dependent rect. 1 2
269 430.42 radiation 1.0 90 < th dose dependent rect. 2 6
290 431.13 humidity 90.0 30 > th dose independent rect. 1 7
296 431.38 radiation 40.0 10 < th dose dependent rect. 2 4
311 431.65 temperature 10.0 270 > th dose dependent rect. 23 20
342 432.46 wind 9.0 10 < th dose independent rect. 2 4
343 432.46 temperature 10.0 10 > th dose independent rect. 2 4
345 432.46 temperature 30.0 10 < th dose independent rect. 2 4
346 432.46 humidity 50.0 10 > th dose independent rect. 2 4
349 432.46 atmosphere 995.0 10 > th dose independent rect. 2 4
350 432.46 atmosphere 1010.0 10 < th dose independent rect. 2 4
352 432.46 radiation 20.0 10 < th dose independent rect. 2 4
355 432.46 temperature 10.0 10 > th dose independent rect. 6 20
363 432.70 radiation 10.0 270 < th dose independent rect. 15 9
368 432.96 radiation 1.0 270 < th dose independent rect. 9 15
391 433.90 temperature 30.0 10 < th dose dependent rect. 12 14
399 434.14 precipitation 0.1 270 < th dose independent rect. 3 22
400 434.14 precipitation 0.1 270 < th dose dependent rect. 3 22
401 434.19 radiation 30.0 30 < th dose independent rect. 14 16
404 434.24 wind 9.0 10 < th dose independent rect. 6 20
455 435.19 precipitation 0.1 10 < th dose independent rect. 6 20
456 435.19 precipitation 0.1 10 < th dose dependent rect. 6 20
495 436.39 wind 9.0 1440 < th dose independent rect. 3 4
496 436.39 temperature 10.0 1440 > th dose independent rect. 3 4
499 436.39 temperature 30.0 1440 < th dose independent rect. 3 4
503 436.39 humidity 50.0 1440 > th dose independent rect. 3 4
508 436.39 atmosphere 995.0 1440 > th dose independent rect. 3 4
509 436.39 radiation 40.0 1440 < th dose independent rect. 3 4
513 436.39 temperature 10.0 1440 > th dose independent rect. 7 20
561 437.74 precipitation 0.1 10 < th dose independent rect. 6 10
562 437.74 precipitation 0.1 10 < th dose dependent rect. 6 10
569 437.83 humidity 50.0 270 > th dose independent rect. 4 20
584 438.43 wind 9.0 10 < th dose independent rect. 6 10
595 438.77 humidity 60.0 270 > th dose independent rect. 17 7
603 438.98 temperature 10.0 10 > th dose independent rect. 6 10
605 438.98 atmosphere 1015.0 10 < th dose independent rect. 6 10
606 438.98 wind 9.0 10 < th dose independent rect. 16 14
618 439.31 humidity 50.0 270 > th dose independent rect. 3 22
620 439.34 temperature 10.0 270 > th dose independent rect. 1 2
622 439.34 temperature 30.0 270 < th dose independent rect. 1 2
623 439.34 humidity 50.0 270 > th dose independent rect. 1 2
626 439.34 atmosphere 995.0 270 > th dose independent rect. 1 2
627 439.34 atmosphere 1010.0 270 < th dose independent rect. 1 2
629 439.34 radiation 1.0 270 < th dose independent rect. 1 2
634 439.34 temperature 10.0 270 > th dose independent rect. 3 22
635 439.34 radiation 1.0 270 < th dose dependent rect. 1 2
648 439.57 wind 9.0 270 < th dose independent rect. 1 2
651 439.63 wind 9.0 10 < th dose dependent rect. 2 4
656 439.78 atmosphere 995.0 10 > th dose independent rect. 6 9
666 439.93 precipitation 0.1 270 < th dose independent rect. 1 2
667 439.93 precipitation 0.1 270 < th dose dependent rect. 1 2
680 440.46 temperature 30.0 270 < th dose independent rect. 17 7
740 441.69 atmosphere 995.0 10 > th dose independent rect. 6 20
744 441.78 humidity 90.0 30 < th dose independent sin 5 NA
764 442.40 precipitation 0.1 30 < th dose independent rect. 2 4
765 442.40 precipitation 0.1 30 < th dose dependent rect. 2 4
777 442.64 temperature 10.0 1440 > th dose independent rect. 7 9
780 442.64 temperature 10.0 1440 > th dose independent rect. 16 15
787 442.79 wind 9.0 270 < th dose independent rect. 3 22
808 443.22 atmosphere 995.0 10 > th dose independent rect. 16 14
820 443.43 humidity 50.0 10 > th dose independent rect. 6 20
950 444.95 humidity 70.0 270 > th dose independent rect. 15 9
953 445.00 wind 1.0 90 > th dose independent rect. 5 10
976 445.10 temperature 30.0 30 < th dose independent rect. 6 20
988 445.32 wind 9.0 270 < th dose dependent rect. 1 2