BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0113500 Os03g0113500|J065208I24
(524 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0113500 Similar to Gt-2 578 e-165
Os04g0541100 Similar to Gt-2 177 1e-44
Os02g0648300 Homeodomain-like containing protein 166 5e-41
Os02g0104500 Similar to DNA-binding protein DF1 133 3e-31
>Os03g0113500 Similar to Gt-2
Length = 524
Score = 578 bits (1489), Expect = e-165, Method: Compositional matrix adjust.
Identities = 314/524 (59%), Positives = 314/524 (59%)
Query: 1 RGLICGCHGVACRKLAEMGYKRSAKKCREKFENVDKYYKRTKDGRAGRGDGKTYRFFXXX 60
RGLICGCHGVACRKLAEMGYKRSAKKCREKFENVDKYYKRTKDGRAGRGDGKTYRFF
Sbjct: 1 RGLICGCHGVACRKLAEMGYKRSAKKCREKFENVDKYYKRTKDGRAGRGDGKTYRFFTEL 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLSALRXXXXXXXXXXXXXXXXXXXXXX 120
GLSALR
Sbjct: 61 EALHGAAAATARPPPVSLAPAPVAVAPPATPAGLSALRVHASPPPPPVKQHAAPPPPVMD 120
Query: 121 XXXXXMTMDDVSFSSGSDTEETAEEXXXXXXXXXXXXXXXXXXXXAMRMFEGLMRQVMER 180
MTMDDVSFSSGSDTEETAEE AMRMFEGLMRQVMER
Sbjct: 121 VAACVMTMDDVSFSSGSDTEETAEEGGKRKRRGGGGIGGGGGGGKAMRMFEGLMRQVMER 180
Query: 181 QEAMQQRLLEAIERRDQERMIREEAWRRQEVARLAREQDALAQERAIAASRDAAVISFIQ 240
QEAMQQRLLEAIERRDQERMIREEAWRRQEVARLAREQDALAQERAIAASRDAAVISFIQ
Sbjct: 181 QEAMQQRLLEAIERRDQERMIREEAWRRQEVARLAREQDALAQERAIAASRDAAVISFIQ 240
Query: 241 RVTGQSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMPMTXXXXXXXXX 300
RVTGQSI MPMT
Sbjct: 241 RVTGQSIAAVPPPPLQPTPVASAAPPPPPQHHHQQTPPPIQVQPHHIMPMTPQPQLQPPQ 300
Query: 301 XXSKEANTVVRAAPPPQEQHDTXXXXXXXXXXXXRWPKAEVHALIQLRTELETRYQDSGP 360
SKEANTVVRAAPPPQEQHDT RWPKAEVHALIQLRTELETRYQDSGP
Sbjct: 301 PQSKEANTVVRAAPPPQEQHDTAASGGGGGASSSRWPKAEVHALIQLRTELETRYQDSGP 360
Query: 361 KGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYYHQLDA 420
KGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYYHQLDA
Sbjct: 361 KGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYYHQLDA 420
Query: 421 LYRTKXXXXXXXXXXXXXXXXXXXXXXXXXSQTPPHVDHXXXXXXXXXXXXXXXXXXXXX 480
LYRTK SQTPPHVDH
Sbjct: 421 LYRTKAANAAAAASASPAPATTTVLAPVPLSQTPPHVDHGGSNGNGNGWASANNGGGGSS 480
Query: 481 XXXMQTKASNNGTATAGGLPXXXXXXXXXXXXXXXXTTDNKVIS 524
MQTKASNNGTATAGGLP TTDNKVIS
Sbjct: 481 SGGMQTKASNNGTATAGGLPVVSVAGGNGNGNGVAATTDNKVIS 524
>Os04g0541100 Similar to Gt-2
Length = 605
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 77/91 (84%), Positives = 85/91 (93%)
Query: 335 RWPKAEVHALIQLRTELETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKY 394
RWPK EV ALIQLR EL+ RYQ++GPKGPLWE+IS+GMRRLGY+RSSKRCKEKWENINKY
Sbjct: 357 RWPKTEVQALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKY 416
Query: 395 FKKVKESNKKRPEDSKTCPYYHQLDALYRTK 425
FKKVKESNKKRPEDSKTCPY+HQLD +YR K
Sbjct: 417 FKKVKESNKKRPEDSKTCPYFHQLDVIYRRK 447
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/79 (69%), Positives = 68/79 (86%)
Query: 169 MFEGLMRQVMERQEAMQQRLLEAIERRDQERMIREEAWRRQEVARLAREQDALAQERAIA 228
FEGL++QV++RQE MQ+R LE +E+R+ ER REEAWRRQEVARL REQ+ LAQERA A
Sbjct: 173 FFEGLIKQVVDRQEEMQRRFLETMEKREAERTAREEAWRRQEVARLNREQEQLAQERAAA 232
Query: 229 ASRDAAVISFIQRVTGQSI 247
ASRDAA+ISF+QR+ GQS+
Sbjct: 233 ASRDAAIISFLQRIGGQSV 251
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/44 (86%), Positives = 42/44 (95%)
Query: 14 KLAEMGYKRSAKKCREKFENVDKYYKRTKDGRAGRGDGKTYRFF 57
KLAE+GYKRSAKKC+EKFENV KYYKRTK+GRAGR DGK+YRFF
Sbjct: 1 KLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFF 44
>Os02g0648300 Homeodomain-like containing protein
Length = 442
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 72/91 (79%), Positives = 82/91 (90%)
Query: 335 RWPKAEVHALIQLRTELETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKY 394
RWPK EV ALI LR E E +Y D GPKGPLWE+I+AGM+R+GY+RS+KRCKEKWENINKY
Sbjct: 134 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKY 193
Query: 395 FKKVKESNKKRPEDSKTCPYYHQLDALYRTK 425
FKKVKESNK+RPEDSKTCPY+HQLDA+YR K
Sbjct: 194 FKKVKESNKRRPEDSKTCPYFHQLDAIYRKK 224
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 65/78 (83%)
Query: 167 MRMFEGLMRQVMERQEAMQQRLLEAIERRDQERMIREEAWRRQEVARLAREQDALAQERA 226
M MFEG+MRQV E+Q+AMQ+ LE +E+ + ER REEAWRR+EVAR+ RE++ L++ERA
Sbjct: 1 MAMFEGMMRQVTEKQDAMQRVFLETLEKWEAERTEREEAWRRKEVARINREREQLSKERA 60
Query: 227 IAASRDAAVISFIQRVTG 244
AASRDAA+I+F+QRV G
Sbjct: 61 AAASRDAALIAFLQRVGG 78
>Os02g0104500 Similar to DNA-binding protein DF1
Length = 370
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 71/88 (80%)
Query: 335 RWPKAEVHALIQLRTELETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKY 394
RWPK EV ALI++RT LE R+Q+ G KGPLWE++SA M GY R++KRCKEKWENINKY
Sbjct: 184 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINKY 243
Query: 395 FKKVKESNKKRPEDSKTCPYYHQLDALY 422
F+K KES KKRP +KTCPY+ +LD LY
Sbjct: 244 FRKAKESGKKRPAHAKTCPYFDELDRLY 271
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,220,127
Number of extensions: 284038
Number of successful extensions: 1614
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1609
Number of HSP's successfully gapped: 9
Length of query: 524
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 419
Effective length of database: 11,553,331
Effective search space: 4840845689
Effective search space used: 4840845689
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)