BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0531700 Os04g0531700|AK119481
         (109 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0531700  Glucose/ribitol dehydrogenase family protein        213   3e-56
Os04g0531900  Glucose/ribitol dehydrogenase family protein        113   2e-26
Os04g0532100  Glucose/ribitol dehydrogenase family protein        109   3e-25
Os04g0532400  Glucose/ribitol dehydrogenase family protein        109   5e-25
Os04g0531750  Glucose/ribitol dehydrogenase family protein        106   4e-24
Os02g0640600                                                      103   3e-23
Os07g0685800  Glucose/ribitol dehydrogenase family protein         95   1e-20
Os01g0929500  Similar to Carbonyl reductase-like protein           74   2e-14

>Os04g0531700 Glucose/ribitol dehydrogenase family protein
          Length = 109

 Score =  213 bits (541), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 109/109 (100%), Positives = 109/109 (100%)

Query: 1   TVRSWHCGLSIIRIALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLEAVDGIRRSG 60
           TVRSWHCGLSIIRIALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLEAVDGIRRSG
Sbjct: 1   TVRSWHCGLSIIRIALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLEAVDGIRRSG 60

Query: 61  AADSDVVFHQLDVTDAASVARLADFVRDQFGRLDILVWASLRDFGSSML 109
           AADSDVVFHQLDVTDAASVARLADFVRDQFGRLDILVWASLRDFGSSML
Sbjct: 61  AADSDVVFHQLDVTDAASVARLADFVRDQFGRLDILVWASLRDFGSSML 109



>Os04g0531900 Glucose/ribitol dehydrogenase family protein
          Length = 307

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 73/89 (82%), Gaps = 2/89 (2%)

Query: 9  LSIIRIALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLEAVDGIRRSGAADSDVVF 68
          L   R+A+VTGGNKG+GLE CRQLA+ G+ VVLTAR+E RG+EA + +  SG   S VVF
Sbjct: 8  LPTKRVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKL--SGMGLSSVVF 65

Query: 69 HQLDVTDAASVARLADFVRDQFGRLDILV 97
          HQL+VTD++SVARLADF++ +FG+LDILV
Sbjct: 66 HQLEVTDSSSVARLADFLKTRFGKLDILV 94



>Os04g0532100 Glucose/ribitol dehydrogenase family protein
          Length = 309

 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 68/85 (80%), Gaps = 2/85 (2%)

Query: 13 RIALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLEAVDGIRRSGAADSDVVFHQLD 72
          RIA+VTGGNKG+GLE CRQLA  G  VVLTAR+EA+G  AV+ +   G   S V+FHQLD
Sbjct: 12 RIAVVTGGNKGIGLEVCRQLAGNGATVVLTARDEAKGAAAVEKLH--GLGLSSVIFHQLD 69

Query: 73 VTDAASVARLADFVRDQFGRLDILV 97
          VTDA+S+ARLA+F+  +FGRLDILV
Sbjct: 70 VTDASSIARLAEFLESRFGRLDILV 94



>Os04g0532400 Glucose/ribitol dehydrogenase family protein
          Length = 167

 Score =  109 bits (272), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 70/84 (83%), Gaps = 2/84 (2%)

Query: 13 RIALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLEAVDGIRRSGAADSDVVFHQLD 72
          R+A+VTGGNK +GLE CRQLA+ G+ VVLTAR+E RG+EA + +R  G   S VVFHQL+
Sbjct: 14 RVAVVTGGNKEIGLEVCRQLAADGITVVLTARDETRGVEAAERLR--GMGLSSVVFHQLE 71

Query: 73 VTDAASVARLADFVRDQFGRLDIL 96
          VTD++SVARLADF++ +FG+LDIL
Sbjct: 72 VTDSSSVARLADFLKTRFGKLDIL 95



>Os04g0531750 Glucose/ribitol dehydrogenase family protein
          Length = 185

 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 71/89 (79%), Gaps = 2/89 (2%)

Query: 9  LSIIRIALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLEAVDGIRRSGAADSDVVF 68
          L   R+A+VTGGNKG+GLE CRQLA+ G+ VVLTAR+E RG+EA + +R  G   S V+F
Sbjct: 8  LPTKRVAVVTGGNKGIGLEVCRQLAADGITVVLTARDETRGVEAAEKLR--GMGLSCVIF 65

Query: 69 HQLDVTDAASVARLADFVRDQFGRLDILV 97
          H L+VTD++SV+RLADF+  +FG+L+ILV
Sbjct: 66 HHLEVTDSSSVSRLADFLTTRFGKLEILV 94



>Os02g0640600 
          Length = 403

 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 67/85 (78%), Gaps = 2/85 (2%)

Query: 13  RIALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLEAVDGIRRSGAADSDVVFHQLD 72
           R+A+VTGGN+GVGLE CRQLAS G+ VVLTAR+E +G +AV  + +SG   S V+FHQLD
Sbjct: 27  RVAVVTGGNRGVGLEICRQLASNGILVVLTARDEKKGSQAVKALEQSGL--SGVIFHQLD 84

Query: 73  VTDAASVARLADFVRDQFGRLDILV 97
           VTD +S+  L +F+R +FG+ +ILV
Sbjct: 85  VTDRSSIMLLVEFIRTKFGKFNILV 109



>Os07g0685800 Glucose/ribitol dehydrogenase family protein
          Length = 373

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 64/85 (75%), Gaps = 1/85 (1%)

Query: 13  RIALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLEAVDGIRRSGAADSDVVFHQLD 72
           R+A+VTGGN+G+GLE CRQLA +G+ V+LTAR+E RG +AV+ +       S+++FHQLD
Sbjct: 77  RLAVVTGGNRGIGLEVCRQLALQGVTVILTARDEKRGKDAVESLCHESNL-SNIIFHQLD 135

Query: 73  VTDAASVARLADFVRDQFGRLDILV 97
           + D  S A LA ++  +FG+LDILV
Sbjct: 136 ILDGNSRASLARYINSRFGKLDILV 160



>Os01g0929500 Similar to Carbonyl reductase-like protein
          Length = 300

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 14  IALVTGGNKGVGLETCRQLASRGLRVVLTARNEARGLEAVDGIR-RSGAADSDVVFHQLD 72
           +A+VTG N+G+G E  RQLA+ GL VVLT+R+ ARG +A + IR  +G     V + QLD
Sbjct: 19  VAVVTGANRGIGYEAARQLATHGLHVVLTSRDAARGRDATEQIRAAAGKPGVSVEWRQLD 78

Query: 73  VTDAASVARLADFVRDQFGRLDILV 97
           VTDAASV   A +V    G + +LV
Sbjct: 79  VTDAASVEGFATWVERTHGGVHVLV 103



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,344,071
Number of extensions: 111460
Number of successful extensions: 540
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 9
Length of query: 109
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 32
Effective length of database: 13,015,323
Effective search space: 416490336
Effective search space used: 416490336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)