BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0498200 Os04g0498200|AK111257
(117 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0498200 Similar to Cytochrome c oxidase subunit 6b 181 9e-47
Os03g0390400 Similar to Cytochrome c oxidase subunit 6b 145 7e-36
Os02g0791400 Cytochrome oxidase c, subunit VIb family protein 114 1e-26
Os07g0621600 Cytochrome oxidase c, subunit VIb family protein 65 2e-11
>Os04g0498200 Similar to Cytochrome c oxidase subunit 6b
Length = 117
Score = 181 bits (459), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/97 (89%), Positives = 87/97 (89%)
Query: 21 TPRFQXXXXXXXXXXLRRHEMAEIEIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGE 80
TPRFQ LRRHEMAEIEIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGE
Sbjct: 21 TPRFQPPSSSPPVPSLRRHEMAEIEIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGE 80
Query: 81 ATADCEKFAKYYRSLCPAEWVEKWNEQRENGTFAGPL 117
ATADCEKFAKYYRSLCPAEWVEKWNEQRENGTFAGPL
Sbjct: 81 ATADCEKFAKYYRSLCPAEWVEKWNEQRENGTFAGPL 117
>Os03g0390400 Similar to Cytochrome c oxidase subunit 6b
Length = 169
Score = 145 bits (366), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 63/75 (84%), Positives = 69/75 (92%)
Query: 43 EIEIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEWVE 102
EI+I+TAPADFRFPTTNQTRHCFTRY+EYHRCV AKGE +C+KFAKYYRSLCP EWVE
Sbjct: 95 EIKIETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEWVE 154
Query: 103 KWNEQRENGTFAGPL 117
+WNEQRENGTF GPL
Sbjct: 155 RWNEQRENGTFPGPL 169
>Os02g0791400 Cytochrome oxidase c, subunit VIb family protein
Length = 86
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 62/78 (79%)
Query: 40 EMAEIEIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAE 99
E I+++T P D+RFP+ NQT+ CFT YIEY++C+ AKGE + +C K+AK YRSLCP E
Sbjct: 9 EKPTIKVETTPGDWRFPSANQTKRCFTCYIEYNKCIEAKGEGSDECTKYAKCYRSLCPGE 68
Query: 100 WVEKWNEQRENGTFAGPL 117
W+E+W EQR NGTFAGPL
Sbjct: 69 WIERWKEQRANGTFAGPL 86
>Os07g0621600 Cytochrome oxidase c, subunit VIb family protein
Length = 55
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 35/44 (79%)
Query: 41 MAEIEIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATAD 84
+ I+I+TAPADFRFPTTNQTRHCFTRYIEYHR + + +D
Sbjct: 4 IYNIQIETAPADFRFPTTNQTRHCFTRYIEYHRYEYDRDLSVSD 47
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.134 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,358,940
Number of extensions: 114732
Number of successful extensions: 219
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 4
Length of query: 117
Length of database: 17,035,801
Length adjustment: 84
Effective length of query: 33
Effective length of database: 12,649,825
Effective search space: 417444225
Effective search space used: 417444225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)