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Os04g0498200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytochrome c oxidase subunit 6b.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0158) R2 : 0.013
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0817 (0.0333) R2dN8 : 0.0168 R2N8 : 0.013
σ : 0.298
deviance : 40.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.94 0.253 12.1 -0.668 0.247 0.16 0.00647 -1.22 -0.0705 2.31 19.2 2057 -- --
30.9 0.259 12.1 -0.529 0.227 0.413 -0.0601 -- -0.0419 2.16 18.6 2261 -- --
28.93 0.251 12.1 -0.67 0.245 0.156 -- -1.21 -0.0707 2.34 19.2 2093 -- --
30.82 0.259 12.1 -0.538 0.23 0.475 -- -- -0.0388 2.48 18.6 2205 -- --
32.3 0.265 12.1 -0.683 -- 0.187 -- -1.18 -0.0756 -- 19 2273 -- --
34.17 0.274 12 -0.334 0.251 -- -0.0507 -- 0.0396 2.28 -- -- -- --
34.18 0.274 12 -0.332 0.251 -- -- -- 0.0399 2.23 -- -- -- --
33.67 0.27 12.1 -0.549 -- 0.511 -- -- -0.044 -- 18.4 2381 -- --
36.32 0.281 12 -- 0.246 0.335 -- -- 0.0549 2.17 17.39 1715 -- --
37.93 0.288 12 -0.322 -- -- -- -- 0.046 -- -- -- -- --
37.09 0.285 12 -- 0.245 -- -- -- 0.0769 2.21 -- -- -- --
39.24 0.292 12 -- -- 0.329 -- -- 0.0527 -- 18.2 1022 -- --
40.66 0.298 12 -- -- -- -- -- 0.0817 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.15 wind 7 4320 > th dose independent rect. 15 4
2 27.25 wind 7 4320 < th dose independent rect. 15 4
4 27.28 wind 7 4320 > th dose independent rect. 15 2
6 27.33 wind 7 4320 < th dose independent rect. 15 2
9 27.52 wind 5 4320 > th dose dependent rect. 18 1
11 27.69 wind 7 4320 > th dose dependent rect. 15 4
14 27.78 wind 7 4320 > th dose dependent rect. 15 1
21 27.86 radiation 10 4320 < th dose dependent rect. 3 2
24 27.94 wind 7 4320 < th dose independent rect. 18 1
28 27.99 wind 7 4320 > th dose independent rect. 18 1
76 28.42 radiation 1 1440 < th dose independent rect. 13 1
78 28.42 radiation 1 1440 < th dose dependent rect. 13 1
100 28.53 radiation 20 14400 < th dose independent rect. 3 3
112 28.58 radiation 1 1440 > th dose independent rect. 12 2
113 28.58 radiation 1 1440 > th dose independent rect. 10 4
144 28.67 radiation 1 1440 < th dose independent rect. 11 3
148 28.67 radiation 1 1440 < th dose dependent rect. 11 3
250 28.90 radiation 30 4320 < th dose independent rect. 7 1
263 28.93 humidity 80 4320 > th dose dependent rect. 10 1
273 28.97 humidity 90 14400 > th dose independent rect. 5 2
281 28.98 radiation 30 4320 < th dose independent rect. 20 12
284 28.98 temperature 20 720 > th dose independent rect. 12 19
289 28.99 radiation 30 4320 < th dose independent rect. 2 6
291 28.99 radiation 30 4320 < th dose independent rect. 22 10
295 28.99 radiation 10 4320 < th dose dependent rect. 1 4
304 29.01 radiation 30 4320 < th dose independent rect. 24 8
331 29.06 humidity 80 14400 > th dose dependent rect. 5 2
339 29.09 humidity 90 14400 > th dose independent rect. 22 2
340 29.09 humidity 90 14400 < th dose independent rect. 5 2
341 29.09 radiation 40 43200 < th dose dependent rect. 3 2
344 29.10 wind 7 4320 > th dose independent sin 16 NA
346 29.10 humidity 90 14400 > th dose independent rect. 21 4
352 29.11 humidity 90 14400 < th dose independent rect. 22 1
365 29.12 humidity 90 14400 > th dose independent rect. 21 13
368 29.12 humidity 90 14400 > th dose independent rect. 14 17
377 29.13 humidity 90 14400 > th dose independent rect. 17 15
401 29.15 wind 7 4320 < th dose independent sin 16 NA
402 29.15 temperature 20 1440 > th dose independent rect. 6 1
411 29.16 humidity 90 14400 < th dose independent rect. 19 6
412 29.16 humidity 90 14400 > th dose independent rect. 18 7
422 29.16 humidity 80 14400 > th dose dependent rect. 23 9
423 29.17 humidity 90 14400 > th dose independent sin 13 NA
425 29.17 humidity 90 14400 < th dose independent rect. 21 3
447 29.18 humidity 90 14400 > th dose independent sin 7 NA
456 29.18 humidity 90 14400 < th dose independent rect. 18 15
473 29.19 humidity 90 14400 < th dose independent rect. 21 13
494 29.20 radiation 20 4320 > th dose dependent rect. 7 1
514 29.21 temperature 20 1440 < th dose independent rect. 12 19
564 29.23 humidity 90 14400 > th dose independent rect. 14 14
567 29.23 humidity 90 14400 < th dose independent rect. 14 17
582 29.24 humidity 90 14400 < th dose independent sin 8 NA
583 29.24 humidity 90 14400 < th dose independent sin 13 NA
594 29.24 temperature 20 1440 > th dose independent rect. 12 16
622 29.25 temperature 20 1440 < th dose independent rect. 12 16
636 29.26 temperature 20 1440 > th dose independent sin 14 NA
645 29.26 temperature 20 720 > th dose independent rect. 18 19
658 29.27 temperature 20 1440 < th dose independent sin 14 NA
664 29.27 temperature 20 1440 > th dose independent rect. 18 8
691 29.27 humidity 50 14400 > th dose dependent rect. 23 8
712 29.28 temperature 20 1440 < th dose independent rect. 20 20
738 29.29 temperature 20 1440 < th dose independent rect. 18 9
742 29.29 temperature 20 1440 > th dose independent rect. 15 13
767 29.30 temperature 20 1440 > th dose independent rect. 19 6
798 29.30 humidity 80 14400 > th dose dependent sin 9 NA
804 29.31 temperature 20 1440 < th dose independent rect. 19 6
813 29.31 temperature 20 1440 < th dose independent rect. 15 13
814 29.31 humidity 90 14400 < th dose independent rect. 14 13
841 29.31 radiation 40 43200 < th dose dependent rect. 23 6
844 29.31 humidity 80 14400 > th dose dependent rect. 17 14
881 29.32 radiation 40 43200 < th dose dependent rect. 1 4
902 29.33 temperature 20 1440 > th dose independent rect. 18 15
903 29.33 temperature 20 1440 < th dose independent rect. 18 15
938 29.33 radiation 10 4320 < th dose dependent rect. 19 10
947 29.34 humidity 90 14400 > th dose independent rect. 3 6