BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0498200 Os04g0498200|AK111257
(117 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G22450.1 | chr1:7925447-7926918 FORWARD LENGTH=192 142 5e-35
AT5G57815.1 | chr5:23426753-23427637 FORWARD LENGTH=79 140 2e-34
AT4G28060.1 | chr4:13944018-13945602 REVERSE LENGTH=79 136 2e-33
AT1G32710.1 | chr1:11833113-11833706 FORWARD LENGTH=135 67 2e-12
>AT1G22450.1 | chr1:7925447-7926918 FORWARD LENGTH=192
Length = 191
Score = 142 bits (357), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 70/75 (93%)
Query: 43 EIEIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEWVE 102
EI+++TAPADFRFPTTNQTRHCFTRY+EYHRCV AKG+ +C+KFAK+YRSLCP+EWV+
Sbjct: 116 EIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVD 175
Query: 103 KWNEQRENGTFAGPL 117
+WNEQRENGTF GPL
Sbjct: 176 RWNEQRENGTFPGPL 190
>AT5G57815.1 | chr5:23426753-23427637 FORWARD LENGTH=79
Length = 78
Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 62/75 (82%), Positives = 69/75 (92%)
Query: 43 EIEIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEWVE 102
EIE+KTAPADFRFPTTNQTRHCFTRYIE+HRC AKGE + DCE+FAKYYR+LCP EWV+
Sbjct: 4 EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63
Query: 103 KWNEQRENGTFAGPL 117
KWNEQRE+GTF GPL
Sbjct: 64 KWNEQRESGTFPGPL 78
>AT4G28060.1 | chr4:13944018-13945602 REVERSE LENGTH=79
Length = 78
Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/75 (81%), Positives = 67/75 (89%)
Query: 43 EIEIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEWVE 102
EIE+KTAPADFRFPTTNQTRHCFTRYIE+HRC AKGE +CE+FAKYYR+LCP EWV+
Sbjct: 4 EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63
Query: 103 KWNEQRENGTFAGPL 117
KWNEQRE GTF GPL
Sbjct: 64 KWNEQRETGTFPGPL 78
>AT1G32710.1 | chr1:11833113-11833706 FORWARD LENGTH=135
Length = 134
Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%)
Query: 49 APADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEWVEK 103
A + RFP TN+TRHCF R+++YH+C+ G DC Y RS+CP E V K
Sbjct: 59 AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSK 113
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.134 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,093,831
Number of extensions: 70604
Number of successful extensions: 132
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 4
Length of query: 117
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 32
Effective length of database: 8,776,209
Effective search space: 280838688
Effective search space used: 280838688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 105 (45.1 bits)