Os02g0791400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome oxidase c, subunit VIb family protein.
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Os02g0791400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome oxidase c, subunit VIb family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.71 | 0.476 | 3.11 | -0.153 | 0.155 | 2.91 | -0.542 | -11.4 | 0.0574 | 3.87 | 94.85 | 238 | 12.6 | -- |
| 124.4 | 0.519 | 3.13 | -0.236 | 0.139 | 5.19 | -1.18 | -- | 0.0154 | 3.36 | 94.94 | 238 | 12.7 | -- |
| 100.86 | 0.468 | 3.1 | -0.158 | 0.164 | 2.95 | -- | -10.9 | 0.0653 | 4.5 | 94.85 | 239 | 13.2 | -- |
| 129.09 | 0.529 | 3.12 | -0.215 | 0.121 | 5.64 | -- | -- | 0.0592 | 5.36 | 94.94 | 238 | 12.8 | -- |
| 102.05 | 0.47 | 3.12 | -0.156 | -- | 3.2 | -- | -10.3 | 0.059 | -- | 94.86 | 245 | 13.4 | -- |
| 188.74 | 0.644 | 3.13 | -0.296 | 0.362 | -- | -1.78 | -- | -0.0586 | 4.02 | -- | -- | -- | -- |
| 197.7 | 0.658 | 3.12 | -0.273 | 0.358 | -- | -- | -- | -0.0487 | 4.49 | -- | -- | -- | -- |
| 129.94 | 0.531 | 3.1 | -0.197 | -- | 5.79 | -- | -- | 0.0669 | -- | 94.94 | 238 | 12.8 | -- |
| 130 | 0.531 | 3.1 | -- | 0.149 | 5.73 | -- | -- | 0.0727 | 5.23 | 94.95 | 238 | 12.8 | -- |
| 204.56 | 0.668 | 3.13 | -0.259 | -- | -- | -- | -- | -0.0392 | -- | -- | -- | -- | -- |
| 199.67 | 0.661 | 3.12 | -- | 0.353 | -- | -- | -- | -0.0182 | 4.51 | -- | -- | -- | -- |
| 130.88 | 0.533 | 3.1 | -- | -- | 5.84 | -- | -- | 0.0864 | -- | 94.94 | 238 | 12.7 | -- |
| 206.34 | 0.67 | 3.12 | -- | -- | -- | -- | -- | -0.0104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.03 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 133.03 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 136.46 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 4 | 136.46 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 7 | 143.93 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 8 | 143.93 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 9 | 144.11 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 10 | 144.11 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 4 |
| 17 | 144.31 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 20 | 144.82 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 28 | 145.38 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 76 | 149.79 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 77 | 149.92 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 101 | 154.33 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 107 | 155.51 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 108 | 155.79 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 109 | 155.82 | wind | 1.0 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 117 | 156.81 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 119 | 156.81 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 121 | 156.81 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 172 | 156.81 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 174 | 156.81 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 176 | 156.81 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 236 | 157.61 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 5 |
| 237 | 157.67 | temperature | 20.0 | 90 | > th | dose independent | rect. | 1 | 5 |
| 243 | 158.79 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 1 | 1 |
| 247 | 158.92 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 252 | 159.45 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 20 | 4 |
| 256 | 159.77 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 3 |
| 272 | 159.77 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 5 |
| 292 | 159.78 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 3 |
| 307 | 159.95 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 313 | 160.18 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 1 |
| 319 | 160.18 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 1 |
| 341 | 160.79 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 344 | 160.88 | wind | 1.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 351 | 161.16 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 368 | 161.54 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 387 | 162.05 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 8 |
| 388 | 162.26 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 406 | 162.75 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 11 | 17 |
| 408 | 162.81 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 6 |
| 411 | 163.04 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 15 | 13 |
| 428 | 163.27 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 441 | 163.59 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 458 | 163.66 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 465 | 163.71 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 502 | 164.27 | humidity | 90.0 | 270 | > th | dose dependent | sin | 14 | NA |
| 607 | 164.89 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 616 | 164.94 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 629 | 165.01 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 674 | 165.45 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 790 | 166.00 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 863 | 166.49 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 868 | 166.50 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 18 | NA |
| 871 | 166.52 | radiation | 1.0 | 1440 | > th | dose independent | sin | 19 | NA |
| 891 | 166.59 | radiation | 1.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 905 | 166.68 | precipitation | 0.1 | 30 | < th | dose independent | sin | 3 | NA |
| 907 | 166.68 | precipitation | 0.1 | 30 | < th | dose dependent | sin | 3 | NA |
| 917 | 166.79 | precipitation | 0.1 | 30 | > th | dose independent | sin | 3 | NA |
| 918 | 166.81 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 921 | 166.81 | precipitation | 0.1 | 30 | > th | dose dependent | sin | 3 | NA |
| 922 | 166.81 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |