BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0791400 Os02g0791400|AK062787
         (86 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0791400  Cytochrome oxidase c, subunit VIb family protein    180   2e-46
Os03g0390400  Similar to Cytochrome c oxidase subunit 6b          124   1e-29
Os04g0498200  Similar to Cytochrome c oxidase subunit 6b          115   1e-26

>Os02g0791400 Cytochrome oxidase c, subunit VIb family protein
          Length = 86

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MSDAPPMAEKPTIKVETTPGDWRFPSANQTKRCFTCYIEYNKCIEAKGEGSDECTKYAKC 60
          MSDAPPMAEKPTIKVETTPGDWRFPSANQTKRCFTCYIEYNKCIEAKGEGSDECTKYAKC
Sbjct: 1  MSDAPPMAEKPTIKVETTPGDWRFPSANQTKRCFTCYIEYNKCIEAKGEGSDECTKYAKC 60

Query: 61 YRSLCPGEWIERWKEQRANGTFAGPL 86
          YRSLCPGEWIERWKEQRANGTFAGPL
Sbjct: 61 YRSLCPGEWIERWKEQRANGTFAGPL 86



>Os03g0390400 Similar to Cytochrome c oxidase subunit 6b
          Length = 169

 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 63/77 (81%)

Query: 10  KPTIKVETTPGDWRFPSANQTKRCFTCYIEYNKCIEAKGEGSDECTKYAKCYRSLCPGEW 69
           KP IK+ET P D+RFP+ NQT+ CFT Y+EY++C+ AKGE + EC K+AK YRSLCPGEW
Sbjct: 93  KPEIKIETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEW 152

Query: 70  IERWKEQRANGTFAGPL 86
           +ERW EQR NGTF GPL
Sbjct: 153 VERWNEQRENGTFPGPL 169



>Os04g0498200 Similar to Cytochrome c oxidase subunit 6b
          Length = 117

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 62/78 (79%)

Query: 9   EKPTIKVETTPGDWRFPSANQTKRCFTCYIEYNKCIEAKGEGSDECTKYAKCYRSLCPGE 68
           E   I+++T P D+RFP+ NQT+ CFT YIEY++C+ AKGE + +C K+AK YRSLCP E
Sbjct: 40  EMAEIEIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAE 99

Query: 69  WIERWKEQRANGTFAGPL 86
           W+E+W EQR NGTFAGPL
Sbjct: 100 WVEKWNEQRENGTFAGPL 117



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,780,127
Number of extensions: 136504
Number of successful extensions: 246
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 3
Length of query: 86
Length of database: 17,035,801
Length adjustment: 56
Effective length of query: 30
Effective length of database: 14,111,817
Effective search space: 423354510
Effective search space used: 423354510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)