BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0791400 Os02g0791400|AK062787
(86 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G22450.1 | chr1:7925447-7926918 FORWARD LENGTH=192 117 1e-27
AT4G28060.1 | chr4:13944018-13945602 REVERSE LENGTH=79 105 5e-24
AT5G57815.1 | chr5:23426753-23427637 FORWARD LENGTH=79 105 6e-24
AT1G32710.1 | chr1:11833113-11833706 FORWARD LENGTH=135 52 5e-08
>AT1G22450.1 | chr1:7925447-7926918 FORWARD LENGTH=192
Length = 191
Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 60/74 (81%)
Query: 13 IKVETTPGDWRFPSANQTKRCFTCYIEYNKCIEAKGEGSDECTKYAKCYRSLCPGEWIER 72
IK+ET P D+RFP+ NQT+ CFT Y+EY++C+ AKG+ + EC K+AK YRSLCP EW++R
Sbjct: 117 IKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDR 176
Query: 73 WKEQRANGTFAGPL 86
W EQR NGTF GPL
Sbjct: 177 WNEQRENGTFPGPL 190
>AT4G28060.1 | chr4:13944018-13945602 REVERSE LENGTH=79
Length = 78
Score = 105 bits (262), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 60/74 (81%)
Query: 13 IKVETTPGDWRFPSANQTKRCFTCYIEYNKCIEAKGEGSDECTKYAKCYRSLCPGEWIER 72
I+++T P D+RFP+ NQT+ CFT YIE+++C AKGE ++EC ++AK YR+LCPGEW+++
Sbjct: 5 IELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVDK 64
Query: 73 WKEQRANGTFAGPL 86
W EQR GTF GPL
Sbjct: 65 WNEQRETGTFPGPL 78
>AT5G57815.1 | chr5:23426753-23427637 FORWARD LENGTH=79
Length = 78
Score = 105 bits (261), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 61/74 (82%)
Query: 13 IKVETTPGDWRFPSANQTKRCFTCYIEYNKCIEAKGEGSDECTKYAKCYRSLCPGEWIER 72
I+++T P D+RFP+ NQT+ CFT YIE+++C AKGE S++C ++AK YR+LCPGEW+++
Sbjct: 5 IELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDK 64
Query: 73 WKEQRANGTFAGPL 86
W EQR +GTF GPL
Sbjct: 65 WNEQRESGTFPGPL 78
>AT1G32710.1 | chr1:11833113-11833706 FORWARD LENGTH=135
Length = 134
Score = 52.4 bits (124), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 23 RFPSANQTKRCFTCYIEYNKCIEAKGEGSDECTKYAKCYRSLCPGEWIER 72
RFP N+T+ CF +++Y+KCIE G +++C RS+CP E + +
Sbjct: 64 RFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSK 113
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,325,140
Number of extensions: 85315
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 4
Length of query: 86
Length of database: 11,106,569
Length adjustment: 57
Effective length of query: 29
Effective length of database: 9,543,857
Effective search space: 276771853
Effective search space used: 276771853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)