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Os07g0621600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome oxidase c, subunit VIb family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.62 (0.0371) R2 : 0.691
β1 : -2.52 (0.136) R2dD : 0.253 R2D : 0.223
β2 : 0.31 (0.0917) R2dC : 0.00738 R2C : -0.044
β3 : -1.3 (0.113) R2dE : 0.144 R2E : 0.244
β4 : 3.82 (0.356) R2dD*C : 0.0696 R2D*C : 0.0624
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.94 (0.0867) R2dN8 : 0.163 R2N8 : 0.165
σ : 0.672
deviance : 208.36
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_____
C
peak time of C : 2.46
E
wheather : temperature
threshold : 25.5
memory length : 896
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
199.01 0.663 7.54 -1.78 0.405 -1.49 3.4 2.7 -0.807 3.37 25.3 934 -- --
208.36 0.672 7.62 -2.52 0.31 -1.3 3.82 -- -0.94 2.46 25.5 896 -- --
221.99 0.694 7.52 -1.44 0.702 -1.62 -- 4.13 -0.745 6.28 25.2 1215 -- --
233.72 0.712 7.59 -2.09 0.624 -1.49 -- -- -0.838 7.11 22.4 8327 -- --
237.56 0.718 7.5 -1.11 -- -1.68 -- 4.53 -0.664 -- 25.59 2005 -- --
271.95 0.773 7.74 -2.92 0.0527 -- 3.69 -- -1.52 2.81 -- -- -- --
295.15 0.805 7.73 -3.01 0.661 -- -- -- -1.55 8.07 -- -- -- --
252.46 0.74 7.6 -1.83 -- -1.67 -- -- -0.933 -- 21.4 8199 -- --
240.81 0.723 7.47 -- 0.612 -2.64 -- -- -0.411 6.98 21.08 22613 -- --
319.1 0.835 7.75 -3 -- -- -- -- -1.54 -- -- -- -- --
533.88 1.08 7.66 -- 0.645 -- -- -- -1.21 8.4 -- -- -- --
261.96 0.754 7.48 -- -- -2.66 -- -- -0.402 -- 21 22541 -- --
557.07 1.1 7.67 -- -- -- -- -- -1.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.11 radiation 10 43200 < th dose independent rect. 18 16
2 181.20 radiation 10 43200 < th dose independent rect. 20 14
4 181.21 radiation 10 43200 < th dose independent rect. 22 12
6 181.22 radiation 10 43200 < th dose independent rect. 24 10
9 181.24 radiation 10 43200 < th dose independent rect. 3 7
12 181.28 radiation 10 43200 < th dose independent rect. 17 18
15 181.58 radiation 10 43200 < th dose independent rect. 6 3
16 181.59 radiation 10 43200 < th dose independent sin 9 NA
17 181.59 radiation 20 43200 < th dose independent rect. 7 1
25 181.61 radiation 10 43200 < th dose independent rect. 17 20
36 182.01 radiation 1 43200 > th dose dependent rect. 18 14
41 182.32 radiation 1 43200 > th dose dependent rect. 4 4
62 182.46 radiation 20 43200 < th dose independent rect. 14 20
70 182.60 radiation 10 43200 < th dose dependent rect. 19 13
72 182.63 radiation 10 43200 < th dose dependent rect. 22 10
74 182.64 radiation 1 43200 > th dose dependent rect. 7 1
75 182.65 radiation 10 43200 < th dose dependent rect. 24 8
86 182.71 radiation 10 43200 < th dose dependent rect. 3 5
90 182.72 radiation 40 43200 < th dose dependent rect. 18 14
106 182.81 radiation 40 43200 < th dose dependent rect. 7 1
117 182.95 radiation 40 43200 < th dose dependent rect. 24 8
140 183.14 radiation 20 43200 > th dose dependent rect. 16 17
144 183.15 radiation 40 43200 < th dose independent rect. 15 20
178 183.26 radiation 40 43200 < th dose independent sin 11 NA
276 183.62 radiation 40 43200 > th dose dependent rect. 14 20
402 184.21 radiation 20 43200 < th dose independent rect. 14 13
406 184.22 radiation 20 43200 < th dose independent rect. 14 11
416 184.25 radiation 20 43200 < th dose independent rect. 14 8
422 184.25 radiation 40 43200 > th dose dependent rect. 7 4
439 184.26 radiation 20 43200 < th dose independent rect. 14 6
445 184.27 radiation 20 43200 < th dose independent rect. 14 4
474 184.42 radiation 30 43200 > th dose dependent sin 11 NA
544 184.73 radiation 40 43200 < th dose independent rect. 13 15
573 184.79 radiation 40 43200 < th dose independent rect. 13 10
582 184.81 radiation 40 43200 < th dose independent rect. 13 8
637 184.96 radiation 40 43200 < th dose independent rect. 14 1
765 185.36 radiation 1 43200 > th dose dependent sin 11 NA
836 185.54 radiation 30 43200 < th dose independent rect. 11 17
840 185.55 radiation 30 43200 < th dose independent rect. 11 14
851 185.57 radiation 30 43200 < th dose independent rect. 11 10
875 185.58 radiation 30 43200 < th dose independent rect. 11 7
885 185.60 radiation 20 43200 > th dose independent rect. 17 15
901 185.65 radiation 20 43200 > th dose independent rect. 6 2
925 185.72 radiation 40 43200 < th dose independent rect. 7 20
928 185.73 radiation 40 43200 < th dose independent rect. 7 18
937 185.74 radiation 40 43200 < th dose independent no NA NA
938 185.74 radiation 40 43200 < th dose independent rect. 7 16
944 185.74 radiation 40 43200 < th dose independent rect. 24 21
948 185.74 radiation 40 43200 < th dose independent rect. 2 23
951 185.74 radiation 40 43200 < th dose independent rect. 18 23
959 185.75 radiation 40 43200 < th dose independent rect. 7 11
969 185.75 radiation 40 43200 < th dose independent rect. 24 18
971 185.75 radiation 40 43200 < th dose independent rect. 22 19