BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0621600 Os07g0621600|J065117P04
         (55 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22450.1  | chr1:7925447-7926918 FORWARD LENGTH=192             65   8e-12
AT5G57815.1  | chr5:23426753-23427637 FORWARD LENGTH=79            62   6e-11
AT4G28060.1  | chr4:13944018-13945602 REVERSE LENGTH=79            62   7e-11

>AT1G22450.1 | chr1:7925447-7926918 FORWARD LENGTH=192
          Length = 191

 Score = 65.1 bits (157), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 27/30 (90%), Positives = 30/30 (100%)

Query: 7   IQIETAPADFRFPTTNQTRHCFTRYIEYHR 36
           I++ETAPADFRFPTTNQTRHCFTRY+EYHR
Sbjct: 117 IKLETAPADFRFPTTNQTRHCFTRYVEYHR 146



>AT5G57815.1 | chr5:23426753-23427637 FORWARD LENGTH=79
          Length = 78

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 26/30 (86%), Positives = 30/30 (100%)

Query: 7  IQIETAPADFRFPTTNQTRHCFTRYIEYHR 36
          I+++TAPADFRFPTTNQTRHCFTRYIE+HR
Sbjct: 5  IELKTAPADFRFPTTNQTRHCFTRYIEFHR 34



>AT4G28060.1 | chr4:13944018-13945602 REVERSE LENGTH=79
          Length = 78

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 26/30 (86%), Positives = 30/30 (100%)

Query: 7  IQIETAPADFRFPTTNQTRHCFTRYIEYHR 36
          I+++TAPADFRFPTTNQTRHCFTRYIE+HR
Sbjct: 5  IELKTAPADFRFPTTNQTRHCFTRYIEFHR 34



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.137    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,218,044
Number of extensions: 36569
Number of successful extensions: 91
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 3
Length of query: 55
Length of database: 11,106,569
Length adjustment: 28
Effective length of query: 27
Effective length of database: 10,338,921
Effective search space: 279150867
Effective search space used: 279150867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)