BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0483000 Os04g0483000|AK121996
(85 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0483000 Ubiquitin domain containing protein 173 2e-44
Os02g0597700 Ubiquitin domain containing protein 125 5e-30
Os01g0907200 Ubiquitin domain containing protein 99 8e-22
AK058550 99 8e-22
Os04g0484100 97 3e-21
Os01g0831200 Ubiquitin domain containing protein 68 1e-12
>Os04g0483000 Ubiquitin domain containing protein
Length = 85
Score = 173 bits (439), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 TCDVAFCAGELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDPAL 60
TCDVAFCAGELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDPAL
Sbjct: 1 TCDVAFCAGELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDPAL 60
Query: 61 KDMKLRAALAARATVQSPYQPFIQV 85
KDMKLRAALAARATVQSPYQPFIQV
Sbjct: 61 KDMKLRAALAARATVQSPYQPFIQV 85
>Os02g0597700 Ubiquitin domain containing protein
Length = 168
Score = 125 bits (315), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 69/87 (79%), Positives = 75/87 (86%), Gaps = 4/87 (4%)
Query: 3 DVAFCA----GELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDP 58
DV+ A GELK +S+VTGLEPREQRLLFRGKERED+DHLHMVGVRDKDKVLLLEDP
Sbjct: 82 DVSIAATSTFGELKVRLSMVTGLEPREQRLLFRGKEREDTDHLHMVGVRDKDKVLLLEDP 141
Query: 59 ALKDMKLRAALAARATVQSPYQPFIQV 85
ALKDMK+RAALAA +QSP QPFIQV
Sbjct: 142 ALKDMKVRAALAAARVMQSPCQPFIQV 168
>Os01g0907200 Ubiquitin domain containing protein
Length = 172
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Query: 1 TCDVAFCAGELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDPAL 60
+ D G+LK ++S+VTGL PR+QRLL++GKER+D DHLHMVGV+DKDKVLLLEDPA+
Sbjct: 89 SIDSTATFGDLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAV 148
Query: 61 KDMKLRAALAARATVQSPYQPFIQV 85
K+ KLR+ A+ + P FI+V
Sbjct: 149 KERKLRSTTLAQ-LMGVPCHSFIEV 172
>AK058550
Length = 172
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Query: 1 TCDVAFCAGELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDPAL 60
+ D G+LK ++S+VTGL PR+QRLL++GKER+D DHLHMVGV+DKDKVLLLEDPA+
Sbjct: 89 SIDSTATFGDLKVMLSLVTGLWPRDQRLLYKGKERDDGDHLHMVGVQDKDKVLLLEDPAV 148
Query: 61 KDMKLRAALAARATVQSPYQPFIQV 85
K+ KLR+ A+ + P FI+V
Sbjct: 149 KERKLRSTTLAQ-LMGVPCHSFIEV 172
>Os04g0484100
Length = 63
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 54/70 (77%), Gaps = 7/70 (10%)
Query: 6 FCAGELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDPALKDMKL 65
ELK VVS+VTGLEPREQR LFRGKEREDSDHL KD VLLLEDPALKDMKL
Sbjct: 1 MSYSELKAVVSMVTGLEPREQRPLFRGKEREDSDHL-------KDMVLLLEDPALKDMKL 53
Query: 66 RAALAARATV 75
RA L ARAT+
Sbjct: 54 RATLVARATI 63
>Os01g0831200 Ubiquitin domain containing protein
Length = 262
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 3 DVAFCA----GELKTVVSIVTGLEPREQRLLFRGKEREDSDHLHMVGVRDKDKVLLLEDP 58
DVA A GELK V++ TG+EP QRL FRGKE+ D++ LH GV+D K+LLLE P
Sbjct: 51 DVAVPAHSTFGELKGVLTQATGVEPERQRLFFRGKEKSDNEFLHTAGVKDGAKLLLLEKP 110
Query: 59 ALKDMKLRA 67
A +++ RA
Sbjct: 111 APANVEQRA 119
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,547,089
Number of extensions: 87354
Number of successful extensions: 296
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 6
Length of query: 85
Length of database: 17,035,801
Length adjustment: 55
Effective length of query: 30
Effective length of database: 14,164,031
Effective search space: 424920930
Effective search space used: 424920930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)