BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0372800 Os04g0372800|AK101615
(486 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0372800 Nuclear transport factor 2 domain containing p... 598 e-171
Os07g0603100 Nuclear transport factor 2 domain containing p... 175 8e-44
AK066155 154 2e-37
Os02g0497700 Similar to Ras-GTPase-activating protein SH3-d... 137 2e-32
Os03g0418800 Nuclear transport factor 2 domain containing p... 110 3e-24
AK103571 86 7e-17
>Os04g0372800 Nuclear transport factor 2 domain containing protein
Length = 486
Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust.
Identities = 310/377 (82%), Positives = 310/377 (82%)
Query: 21 QVVGNAFVHQYYNILHQSPDLVHRFYQDGSRIGRPASPAAAEMDTVTTMEAINAKIVSMD 80
QVVGNAFVHQYYNILHQSPDLVHRFYQDGSRIGRPASPAAAEMDTVTTMEAINAKIVSMD
Sbjct: 21 QVVGNAFVHQYYNILHQSPDLVHRFYQDGSRIGRPASPAAAEMDTVTTMEAINAKIVSMD 80
Query: 81 IVRAEIKAVDAQESXXXXXXXXXXXXXXXSDDVRREFSQSFFLAPQEKGYFVLNDILRYV 140
IVRAEIKAVDAQES SDDVRREFSQSFFLAPQEKGYFVLNDILRYV
Sbjct: 81 IVRAEIKAVDAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAPQEKGYFVLNDILRYV 140
Query: 141 GGEGDQEVXXXXXXXXXXXXXQQPDSVPAPSANGTSVPREQEAFSQPEQHVADPAPNAQE 200
GGEGDQEV QQPDSVPAPSANGTSVPREQEAFSQPEQHVADPAPNAQE
Sbjct: 141 GGEGDQEVEPEPELELSFPPSQQPDSVPAPSANGTSVPREQEAFSQPEQHVADPAPNAQE 200
Query: 201 ADLNGEEVYNPPNNTEGPVVEETPIPEVIDEXXXXXXXXXXXXXXXXXXXXXXXXXXKKS 260
ADLNGEEVYNPPNNTEGPVVEETPIPEVIDE KKS
Sbjct: 201 ADLNGEEVYNPPNNTEGPVVEETPIPEVIDEVPNNVAVAMPTPPAPAPAPVPQEEAPKKS 260
Query: 261 YASIVKVMKEIPPQISAIPSRPAPPKQEKQXXXXXXXXXXXXXTFSPNPESSNIQEAEVD 320
YASIVKVMKEIPPQISAIPSRPAPPKQEKQ TFSPNPESSNIQEAEVD
Sbjct: 261 YASIVKVMKEIPPQISAIPSRPAPPKQEKQVAPAPVAPVADAPTFSPNPESSNIQEAEVD 320
Query: 321 AHAIYVRNLPLSATPEQLEEAFKKFGAIKPDGIQVRSHKIQGFCYGFVEFEDPSSVQSAI 380
AHAIYVRNLPLSATPEQLEEAFKKFGAIKPDGIQVRSHKIQGFCYGFVEFEDPSSVQSAI
Sbjct: 321 AHAIYVRNLPLSATPEQLEEAFKKFGAIKPDGIQVRSHKIQGFCYGFVEFEDPSSVQSAI 380
Query: 381 AGSPVTISDRQCYVEEK 397
AGSPVTISDRQCYVEEK
Sbjct: 381 AGSPVTISDRQCYVEEK 397
>Os07g0603100 Nuclear transport factor 2 domain containing protein
Length = 569
Score = 175 bits (443), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 137/394 (34%), Positives = 183/394 (46%), Gaps = 31/394 (7%)
Query: 21 QVVGNAFVHQYYNILHQSPDLVHRFYQDGSRIGRPASPAAAEMDTVTTMEAINAKIVSMD 80
Q++GNAFV QYYN+LH SP V +FY D S +GRP S M +VTT+ AIN + +S D
Sbjct: 15 QMIGNAFVQQYYNVLHSSPGQVCKFYHDSSTLGRPDSNGT--MTSVTTLTAINDEFLSTD 72
Query: 81 IVRAEIKA--VDAQESXXXXXXXXXXXXXXXSDDVRREFSQSFFLAPQEK-GYFVLNDIL 137
IK VDAQ S + +R FSQSFFLAPQE GYFVLND+L
Sbjct: 73 FSSCLIKLENVDAQLSLNGGVHILVTGSIGHNGTMRHRFSQSFFLAPQESGGYFVLNDML 132
Query: 138 RYVGGEGDQEVXXXXXXXX--XXXXXQQPDSVPAPSANGT---SVPREQEAFSQPEQHVA 192
RY + QE + DS+P + T + E E +
Sbjct: 133 RY---DSLQETLLTETNDSPQERLLTEINDSLPNHVDDNTHSVTFTSEPETSGNVNETAD 189
Query: 193 DPAPNAQEADLNGEEVYNPPNNTEGPVVEETPIPEVIDEXXXXXXXX-XXXXXXXXXXXX 251
P+A+ + N V N P N P EE + E E
Sbjct: 190 LELPSAENVNDN---VENLPANDSSP--EENVLVEACTEVVSSCAENIPAAAPAPAPRAS 244
Query: 252 XXXXXXKKSYASIVKVMKEIPPQISAIPSRPAPPKQEKQXXXXXXXX--------XXXXX 303
K+SYAS+VKV KE P +P P +
Sbjct: 245 TQKDVTKQSYASVVKVTKEGTPTPPVAKPKPKPKPKPTAKVTDNVEKAVSSPVKPTNAAD 304
Query: 304 TFSPNPESSNIQEAEVDAHAIYVRNLPLSATPEQLEEAFKKFGAIKPDGIQVRSHKIQGF 363
T SPN ++ +++ +++YV++LP T + +EE F+KFGAI+P GIQVR + GF
Sbjct: 305 TTSPNDKNVLVEQ----GYSVYVKHLPYECTTKDVEEKFRKFGAIRPGGIQVRHRQPDGF 360
Query: 364 CYGFVEFEDPSSVQSAIAGSPVTISDRQCYVEEK 397
C+GFVEFE S+ +AI SPV+I + VEEK
Sbjct: 361 CFGFVEFESRQSMLAAIEASPVSIGSKASIVEEK 394
>AK066155
Length = 522
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/127 (60%), Positives = 86/127 (67%), Gaps = 1/127 (0%)
Query: 272 PPQISAIPSRPAPPKQEKQXXXXXXXXXXXXXT-FSPNPESSNIQEAEVDAHAIYVRNLP 330
P I+ +PS E T FS N ESSN E EVDAHAIYVR+LP
Sbjct: 307 PSWITTLPSSLTSLYLENLRNRLNGTLNIADATPFSSNAESSNTHEPEVDAHAIYVRSLP 366
Query: 331 LSATPEQLEEAFKKFGAIKPDGIQVRSHKIQGFCYGFVEFEDPSSVQSAIAGSPVTISDR 390
L+AT QLE+ FKKFG IKPDGIQVRSHKIQGFCYGFVEFE+ ++VQSAI SPV I R
Sbjct: 367 LNATTTQLEDEFKKFGTIKPDGIQVRSHKIQGFCYGFVEFEEATAVQSAIEASPVMIGGR 426
Query: 391 QCYVEEK 397
QC+VEEK
Sbjct: 427 QCFVEEK 433
>Os02g0497700 Similar to Ras-GTPase-activating protein SH3-domain binding
protein-like
Length = 169
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/80 (78%), Positives = 70/80 (87%)
Query: 318 EVDAHAIYVRNLPLSATPEQLEEAFKKFGAIKPDGIQVRSHKIQGFCYGFVEFEDPSSVQ 377
EVDAHAIYVR+LPL+AT QLE+ FKKFG IKPDGIQVRSHKIQGFCYGFVEFE+ ++VQ
Sbjct: 1 EVDAHAIYVRSLPLNATTTQLEDEFKKFGTIKPDGIQVRSHKIQGFCYGFVEFEEATAVQ 60
Query: 378 SAIAGSPVTISDRQCYVEEK 397
SAI SPV I RQC+VEEK
Sbjct: 61 SAIEASPVMIGGRQCFVEEK 80
>Os03g0418800 Nuclear transport factor 2 domain containing protein
Length = 488
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 258 KKSYASIVKVMKEIPPQISAIPSRPAPPKQEKQXXXXXXXXXXXXXTFSPNPESSNIQEA 317
KKSYASIVKVMKE+ + +PAP K T P +N E
Sbjct: 233 KKSYASIVKVMKEVS-LTPVVKPKPAPKHVVKTVEASEKPSVKSSQTVEITPNDNNDAEN 291
Query: 318 EVD----AHAIYVRNLPLSATPEQLEEAFKKFGAIKPDGIQVRSHKIQGFCYGFVEFEDP 373
++++V++LP + T + +EE FKKFGAIKP GIQVR++KI FC+GF+EFE
Sbjct: 292 NTSNDEQGYSVFVKSLPHNVTVQTVEEEFKKFGAIKPGGIQVRNNKIDRFCFGFIEFESQ 351
Query: 374 SSVQSAIAGSPVTISDRQCYVEEK 397
S+Q+AI SP+ + ++ +VEEK
Sbjct: 352 QSMQAAIEASPIHMGGKEVFVEEK 375
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 73/123 (59%), Gaps = 6/123 (4%)
Query: 21 QVVGNAFVHQYYNILHQSPDLVHRFYQDGSRIGRPASPAAAEMDTVTTMEAINAKIVSMD 80
QV+ AFV QYY+ILH++PD V++FYQD S +GRP S M V+T IN I+SMD
Sbjct: 15 QVISGAFVQQYYHILHETPDQVYKFYQDASIVGRPDSNGV--MKYVSTTADINKIILSMD 72
Query: 81 IVR--AEIKAVDAQESXXXXXXXXXXXXXXXSDDVRREFSQSFFLAPQEK-GYFVLNDIL 137
EI+ DAQ S S+ + R F+QSFFLAPQE GY VLNDI
Sbjct: 73 FSNYLTEIETADAQLS-HQDGVLIVVTGSLTSEGICRRFTQSFFLAPQESGGYVVLNDIF 131
Query: 138 RYV 140
R++
Sbjct: 132 RFI 134
>AK103571
Length = 448
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 9/146 (6%)
Query: 258 KKSYASIVKVMKEIPPQISAIPSRPAP--PKQEKQXXXXXXXXXXXXXTFSPNPESSNIQ 315
KK+YASI++ K P + + ++PAP P Q + + P++
Sbjct: 242 KKTYASILRTAK--APLVFPV-AQPAPTRPHQATETNQAAQHSVMTSSVATEKPKTDVYG 298
Query: 316 EAEV----DAHAIYVRNLPLSATPEQLEEAFKKFGAIKPDGIQVRSHKIQGFCYGFVEFE 371
E V ++ ++YV N+P S + LE FKKFG + PDG+ +RS K G Y FVEFE
Sbjct: 299 EFAVQDDEESKSVYVGNVPSSVSEADLENEFKKFGRLIPDGVAIRSRKETGGYYAFVEFE 358
Query: 372 DPSSVQSAIAGSPVTISDRQCYVEEK 397
+ S V +A+ SP+ I+ RQ YVEE+
Sbjct: 359 ELSGVHNALKASPIEINGRQIYVEER 384
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.129 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,619,992
Number of extensions: 473302
Number of successful extensions: 1335
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1325
Number of HSP's successfully gapped: 8
Length of query: 486
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 381
Effective length of database: 11,553,331
Effective search space: 4401819111
Effective search space used: 4401819111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)