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Os03g0418800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nuclear transport factor 2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0178) R2 : 0.0122
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.089 (0.0375) R2dN8 : 0.0158 R2N8 : 0.0122
σ : 0.335
deviance : 51.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
38.49 0.291 11.2 -0.361 0.33 -0.279 -0.138 0.312 0.011 16.2 19.9 106 -- --
38.72 0.29 11.2 -0.334 0.328 -0.33 -0.166 -- 0.0181 16.1 19.4 165 -- --
38.28 0.288 11.2 -0.376 0.321 -0.252 -- 0.45 -0.00297 16.4 20.5 106 -- --
38.63 0.291 11.2 -0.334 0.331 -0.355 -- -- 0.0214 16.5 19.2 170 -- --
43.9 0.309 11.2 -0.393 -- -0.331 -- 0.37 -0.0123 -- 20.4 105 -- --
42.04 0.304 11.2 -0.224 0.374 -- -0.327 -- 0.0737 15.7 -- -- -- --
42.33 0.305 11.2 -0.229 0.375 -- -- -- 0.0719 15.9 -- -- -- --
44.15 0.309 11.2 -0.397 -- -0.445 -- -- 0.0134 -- 19.5 184 -- --
41.35 0.301 11.2 -- 0.346 -0.273 -- -- 0.0676 16.3 19.2 170 -- --
50.04 0.331 11.2 -0.244 -- -- -- -- 0.0619 -- -- -- -- --
43.71 0.309 11.2 -- 0.38 -- -- -- 0.0974 15.9 -- -- -- --
47.49 0.321 11.2 -- -- -0.306 -- -- 0.0413 -- 20.4 116 -- --
51.61 0.335 11.2 -- -- -- -- -- 0.089 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.68 temperature 20.0 90 > th dose independent rect. 7 21
2 34.98 temperature 20.0 30 > th dose independent rect. 9 19
8 35.16 temperature 20.0 10 > th dose independent rect. 21 7
9 35.20 temperature 20.0 90 > th dose independent rect. 20 8
14 35.39 atmosphere 1005.0 270 > th dose independent rect. 14 17
16 35.43 atmosphere 1000.0 90 > th dose dependent rect. 23 9
20 35.56 atmosphere 1000.0 10 > th dose dependent rect. 15 18
21 35.58 atmosphere 1000.0 90 > th dose dependent rect. 14 18
24 35.60 atmosphere 1005.0 10 > th dose independent rect. 15 18
29 35.65 temperature 10.0 270 > th dose dependent rect. 17 9
35 35.71 atmosphere 1005.0 90 > th dose independent rect. 23 9
42 35.80 temperature 10.0 90 > th dose dependent rect. 7 21
50 35.85 temperature 10.0 10 > th dose dependent rect. 7 21
66 35.96 temperature 10.0 10 > th dose dependent rect. 9 19
67 36.00 atmosphere 1005.0 720 > th dose independent rect. 19 6
141 36.35 atmosphere 1005.0 720 > th dose independent rect. 19 3
151 36.37 temperature 20.0 90 > th dose independent rect. 20 19
156 36.40 temperature 20.0 10 > th dose independent rect. 21 18
182 36.52 temperature 15.0 10 > th dose dependent rect. 21 7
188 36.54 temperature 10.0 10 > th dose dependent rect. 9 17
191 36.57 atmosphere 1005.0 270 > th dose independent rect. 2 4
215 36.63 atmosphere 1000.0 270 > th dose dependent rect. 2 4
217 36.63 atmosphere 1000.0 10 > th dose dependent rect. 23 10
307 36.90 temperature 20.0 90 > th dose independent rect. 7 16
361 37.04 atmosphere 1000.0 10 > th dose dependent rect. 2 7
390 37.11 temperature 30.0 90 < th dose dependent rect. 15 17
429 37.21 atmosphere 1005.0 10 > th dose independent rect. 2 7
483 37.31 wind 5.0 270 < th dose independent rect. 2 4
500 37.35 atmosphere 1005.0 10 > th dose independent rect. 4 5
501 37.35 temperature 15.0 90 > th dose independent rect. 7 8
523 37.38 temperature 10.0 90 > th dose dependent rect. 8 15
524 37.38 temperature 15.0 10 > th dose dependent rect. 9 15
542 37.43 precipitation 0.1 270 < th dose independent rect. 2 15
545 37.43 precipitation 0.1 270 < th dose dependent rect. 2 15
554 37.45 atmosphere 1005.0 720 < th dose independent rect. 19 6
564 37.46 wind 5.0 90 < th dose independent rect. 23 9
581 37.49 atmosphere 1015.0 270 < th dose independent rect. 6 20
607 37.52 radiation 1.0 270 < th dose independent rect. 2 15
626 37.54 temperature 30.0 90 < th dose dependent rect. 17 15
628 37.55 atmosphere 1015.0 270 < th dose independent rect. 17 9
650 37.57 atmosphere 1015.0 10 < th dose dependent rect. 20 8
656 37.57 temperature 30.0 270 < th dose dependent rect. 11 19
688 37.62 wind 9.0 270 < th dose dependent rect. 6 7
691 37.62 temperature 30.0 90 < th dose dependent rect. 11 21
692 37.63 precipitation 0.1 270 < th dose independent rect. 2 4
700 37.63 precipitation 0.1 270 < th dose dependent rect. 2 4
703 37.64 wind 9.0 270 < th dose independent rect. 17 9
722 37.67 temperature 10.0 270 > th dose independent rect. 17 9
723 37.67 radiation 20.0 270 < th dose independent rect. 17 9
726 37.67 temperature 10.0 270 > th dose independent rect. 2 15
727 37.67 atmosphere 1015.0 270 < th dose independent rect. 2 15
732 37.68 atmosphere 1005.0 270 > th dose independent sin 12 NA
747 37.69 precipitation 0.1 270 < th dose independent rect. 3 2
749 37.69 temperature 20.0 90 < th dose independent rect. 18 13
751 37.69 atmosphere 995.0 270 > th dose independent rect. 2 15
754 37.69 precipitation 0.1 270 < th dose dependent rect. 3 2
759 37.70 temperature 20.0 90 < th dose independent rect. 11 20
783 37.73 wind 5.0 10 < th dose independent rect. 23 10
785 37.73 wind 1.0 270 > th dose independent rect. 2 15
793 37.73 radiation 1.0 270 < th dose dependent rect. 2 15
813 37.76 wind 9.0 270 < th dose independent rect. 6 20
825 37.77 wind 7.0 90 < th dose dependent rect. 4 3
830 37.77 radiation 40.0 270 < th dose dependent rect. 17 9
833 37.78 wind 1.0 270 > th dose independent rect. 2 4
835 37.78 humidity 50.0 270 > th dose independent rect. 17 9
858 37.79 wind 9.0 270 < th dose dependent rect. 2 4
866 37.80 wind 9.0 270 < th dose independent rect. 2 15
874 37.81 humidity 90.0 90 < th dose independent rect. 7 8
880 37.81 temperature 20.0 90 < th dose independent rect. 15 16
895 37.82 wind 1.0 270 > th dose independent rect. 13 17
897 37.82 atmosphere 1015.0 10 < th dose independent rect. 9 19
914 37.83 temperature 30.0 10 < th dose dependent rect. 12 21
920 37.84 radiation 30.0 90 < th dose independent rect. 15 16
921 37.84 precipitation 0.1 90 < th dose independent rect. 15 16
926 37.84 precipitation 0.1 90 < th dose dependent rect. 15 16
928 37.85 temperature 10.0 270 > th dose independent rect. 2 4
930 37.85 temperature 30.0 270 < th dose independent rect. 2 4
931 37.85 humidity 50.0 270 > th dose independent rect. 2 4
934 37.85 atmosphere 995.0 270 > th dose independent rect. 2 4
935 37.85 atmosphere 1010.0 270 < th dose independent rect. 2 4
937 37.85 radiation 20.0 270 < th dose independent rect. 2 4
953 37.85 atmosphere 1015.0 90 < th dose dependent rect. 20 15
964 37.86 radiation 40.0 270 < th dose dependent rect. 2 4
967 37.86 radiation 40.0 90 < th dose dependent rect. 4 13
969 37.86 temperature 10.0 270 > th dose dependent rect. 18 16
992 37.88 humidity 90.0 10 < th dose independent rect. 9 6
996 37.88 precipitation 0.1 270 < th dose independent rect. 17 9