Os04g0372800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nuclear transport factor 2 domain containing protein.
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Os04g0372800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nuclear transport factor 2 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.06 | 0.37 | 8.52 | 1.71 | 0.651 | -0.807 | 0.41 | 1.26 | 0.366 | 10.5 | 24.17 | 1224 | -- | -- |
| 63.36 | 0.371 | 8.56 | 1.47 | 0.703 | -0.607 | 0.347 | -- | 0.282 | 10.5 | 24.12 | 1291 | -- | -- |
| 62.7 | 0.369 | 8.53 | 1.66 | 0.643 | -0.8 | -- | 1.01 | 0.35 | 10.4 | 24.18 | 1211 | -- | -- |
| 63.03 | 0.37 | 8.57 | 1.39 | 0.612 | -0.731 | -- | -- | 0.276 | 10.5 | 24.2 | 1129 | -- | -- |
| 78.03 | 0.411 | 8.55 | 1.69 | -- | -1.21 | -- | 1.1 | 0.371 | -- | 23.97 | 906 | -- | -- |
| 78.44 | 0.415 | 8.59 | 1.16 | 0.754 | -- | 0.467 | -- | 0.174 | 10.9 | -- | -- | -- | -- |
| 79.35 | 0.417 | 8.59 | 1.18 | 0.752 | -- | -- | -- | 0.175 | 10.8 | -- | -- | -- | -- |
| 78.43 | 0.412 | 8.57 | 1.45 | -- | -1.12 | -- | -- | 0.307 | -- | 24 | 898 | -- | -- |
| 108.27 | 0.485 | 8.62 | -- | 0.686 | -0.416 | -- | -- | -0.0139 | 11 | 30.64 | 882 | -- | -- |
| 114.44 | 0.5 | 8.6 | 1.16 | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
| 115.74 | 0.503 | 8.61 | -- | 0.743 | -- | -- | -- | 0.0443 | 10.7 | -- | -- | -- | -- |
| 130.37 | 0.532 | 8.62 | -- | -- | -0.803 | -- | -- | 0.103 | -- | 24.4 | 860 | -- | -- |
| 149.89 | 0.571 | 8.63 | -- | -- | -- | -- | -- | 0.0417 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 11 | 61.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 14 | 62.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 16 | 62.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 28 | 62.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 36 | 62.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 37 | 62.17 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 16 |
| 41 | 62.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 50 | 62.21 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 55 | 62.22 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 63 | 62.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 68 | 62.25 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 95 | 62.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 112 | 62.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 128 | 62.36 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 177 | 62.40 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 181 | 62.40 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 195 | 62.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 222 | 62.44 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 237 | 62.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 300 | 62.56 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 305 | 62.58 | humidity | 80 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 310 | 62.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 316 | 62.62 | radiation | 1 | 1440 | < th | dose dependent | sin | 20 | NA |
| 326 | 62.67 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 349 | 62.74 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 353 | 62.75 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |
| 354 | 62.75 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 16 |
| 355 | 62.76 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 363 | 62.78 | radiation | 1 | 1440 | > th | dose independent | sin | 19 | NA |
| 388 | 62.83 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 414 | 62.86 | humidity | 80 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 417 | 62.88 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 9 |
| 420 | 62.88 | humidity | 80 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 469 | 62.94 | radiation | 10 | 720 | < th | dose dependent | rect. | 16 | 9 |
| 479 | 62.95 | humidity | 80 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 499 | 62.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 20 |
| 533 | 63.03 | humidity | 50 | 720 | > th | dose dependent | sin | 15 | NA |
| 549 | 63.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 590 | 63.09 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 607 | 63.10 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 617 | 63.11 | humidity | 80 | 1440 | > th | dose independent | rect. | 17 | 2 |
| 630 | 63.12 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 733 | 63.22 | temperature | 30 | 720 | < th | dose independent | sin | 14 | NA |
| 761 | 63.26 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 2 |
| 880 | 63.39 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 923 | 63.45 | humidity | 90 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 960 | 63.48 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 19 |