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Os07g0603100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nuclear transport factor 2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.13 (0.0304) R2 : 0.76
β1 : 2.32 (0.111) R2dD : 0.237 R2D : 0.195
β2 : 2.55 (0.0793) R2dC : 0.549 R2C : 0.521
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.415 (0.0649) R2dN8 : 0.0288 R2N8 : -0.0129
σ : 0.572
deviance : 149.16
__
_____
C
peak time of C : 17.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
132.6 0.541 9.15 2.29 2.15 1.1 0.62 0.468 0.339 18.4 0.86 248 -- --
133.06 0.537 9.15 2.29 2.16 1.06 0.679 -- 0.338 18.4 0.9135 247 -- --
133.54 0.538 9.15 2.28 2.15 1.09 -- 0.565 0.342 18.4 0.8984 247 -- --
134.24 0.54 9.15 2.28 2.16 1.08 -- -- 0.339 18.4 0.7493 247 -- --
214.85 0.683 9.15 2.1 -- 2.81 -- -0.459 0.102 -- -30.51 614 -- --
147.83 0.57 9.13 2.32 2.55 -- 0.732 -- 0.412 17.5 -- -- -- --
149.16 0.572 9.13 2.32 2.55 -- -- -- 0.415 17.5 -- -- -- --
214.45 0.682 9.15 2.12 -- 2.79 -- -- 0.114 -- -32.24 617 -- --
271.24 0.767 9.2 -- 2.07 1.18 -- -- 0.0704 18.3 10 291 -- --
488.57 1.03 9.09 2.24 -- -- -- -- 0.353 -- -- -- -- --
291.22 0.798 9.19 -- 2.52 -- -- -- 0.156 17.5 -- -- -- --
332.79 0.85 9.2 -- -- 2.86 -- -- -0.127 -- -35.16 618 -- --
620.54 1.16 9.15 -- -- -- -- -- 0.104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 120.38 radiation 20.0 270 < th dose independent rect. 3 6
3 120.73 radiation 40.0 270 < th dose dependent rect. 3 8
6 121.57 radiation 40.0 90 < th dose independent rect. 5 18
7 121.98 radiation 20.0 270 < th dose independent rect. 17 15
10 122.38 radiation 40.0 270 < th dose independent rect. 3 19
11 122.44 humidity 70.0 270 > th dose independent rect. 3 8
13 122.49 radiation 40.0 270 < th dose dependent rect. 3 10
16 122.69 humidity 70.0 90 > th dose independent rect. 5 6
20 122.85 radiation 40.0 270 < th dose dependent rect. 3 19
25 123.16 radiation 30.0 90 < th dose independent rect. 5 6
29 123.68 humidity 70.0 90 > th dose independent rect. 5 17
34 123.84 humidity 50.0 270 > th dose dependent rect. 3 8
36 123.85 radiation 40.0 10 < th dose independent rect. 6 16
38 123.87 wind 7.0 270 < th dose independent rect. 8 9
41 124.02 humidity 70.0 90 > th dose independent rect. 5 10
44 124.11 humidity 50.0 90 > th dose dependent rect. 5 17
49 124.15 radiation 30.0 270 < th dose dependent rect. 17 15
57 124.29 humidity 70.0 90 > th dose independent rect. 5 8
73 124.57 humidity 50.0 270 > th dose dependent rect. 3 10
76 124.67 radiation 30.0 270 < th dose dependent rect. 15 18
84 124.83 humidity 60.0 90 > th dose dependent rect. 5 9
88 124.92 atmosphere 1000.0 270 > th dose independent rect. 21 6
91 124.94 atmosphere 995.0 270 > th dose dependent rect. 22 5
112 125.31 wind 7.0 270 < th dose independent rect. 8 19
117 125.35 humidity 50.0 90 > th dose dependent rect. 5 6
118 125.36 humidity 70.0 270 > th dose independent rect. 3 17
130 125.51 humidity 60.0 10 > th dose independent rect. 5 17
153 125.77 humidity 60.0 270 > th dose dependent rect. 3 18
156 125.78 atmosphere 1015.0 270 < th dose independent rect. 3 19
157 125.83 humidity 50.0 10 > th dose dependent rect. 6 16
161 125.86 radiation 40.0 10 < th dose independent rect. 5 19
206 126.35 wind 1.0 270 > th dose independent rect. 3 5
248 126.68 wind 9.0 270 < th dose dependent rect. 8 9
250 126.71 atmosphere 1015.0 270 < th dose independent rect. 17 15
281 126.95 precipitation 0.1 270 < th dose independent rect. 8 19
283 126.95 precipitation 0.1 270 < th dose dependent rect. 8 19
291 127.02 temperature 30.0 90 < th dose independent rect. 5 17
295 127.06 precipitation 0.1 270 < th dose independent rect. 8 9
297 127.06 precipitation 0.1 270 < th dose dependent rect. 8 9
298 127.07 humidity 50.0 270 > th dose dependent rect. 21 6
321 127.25 wind 9.0 270 < th dose dependent rect. 8 19
326 127.30 humidity 60.0 10 > th dose independent rect. 5 9
382 127.59 humidity 50.0 270 > th dose independent rect. 17 15
391 127.62 atmosphere 1015.0 90 < th dose independent rect. 5 18
394 127.63 wind 1.0 270 > th dose independent rect. 3 18
403 127.68 temperature 10.0 270 > th dose independent rect. 8 9
404 127.68 atmosphere 1015.0 270 < th dose independent rect. 8 9
405 127.68 temperature 10.0 270 > th dose independent rect. 17 15
410 127.73 wind 7.0 270 < th dose independent rect. 3 5
411 127.73 precipitation 0.1 270 < th dose independent rect. 21 6
412 127.73 precipitation 0.1 270 < th dose dependent rect. 21 6
422 127.79 temperature 30.0 270 < th dose independent rect. 3 6
436 127.86 temperature 30.0 90 < th dose independent rect. 5 4
438 127.87 temperature 10.0 270 > th dose independent rect. 21 6
439 127.87 temperature 30.0 270 < th dose independent rect. 21 6
440 127.87 humidity 50.0 270 > th dose independent rect. 21 6
444 127.87 radiation 1.0 270 < th dose independent rect. 21 6
450 127.87 temperature 10.0 270 > th dose independent rect. 3 18
452 127.87 radiation 1.0 270 < th dose dependent rect. 21 6
458 127.89 temperature 10.0 270 > th dose independent rect. 3 5
461 127.89 humidity 50.0 270 > th dose independent rect. 3 5
463 127.89 atmosphere 995.0 270 > th dose independent rect. 3 5
464 127.89 atmosphere 1015.0 270 < th dose independent rect. 3 5
466 127.89 temperature 10.0 270 > th dose independent rect. 8 19
467 127.90 wind 9.0 270 < th dose independent rect. 21 6
479 128.04 wind 9.0 270 < th dose independent rect. 17 15
497 128.11 temperature 30.0 90 < th dose dependent rect. 5 4
515 128.19 radiation 40.0 10 < th dose dependent rect. 6 16
518 128.20 precipitation 0.1 270 < th dose independent rect. 3 5
519 128.20 precipitation 0.1 270 < th dose dependent rect. 3 5
570 128.36 atmosphere 995.0 270 > th dose independent rect. 17 15
590 128.48 radiation 40.0 10 < th dose independent rect. 5 9
627 128.64 wind 9.0 90 < th dose independent rect. 5 4
628 128.64 temperature 10.0 90 > th dose independent rect. 5 4
631 128.64 atmosphere 995.0 90 > th dose independent rect. 5 4
632 128.64 atmosphere 1015.0 90 < th dose independent rect. 5 4
650 128.69 precipitation 0.1 90 < th dose independent rect. 5 4
653 128.69 precipitation 0.1 90 < th dose dependent rect. 5 4
660 128.71 humidity 60.0 10 > th dose dependent rect. 6 8
667 128.73 wind 9.0 270 < th dose independent rect. 6 23
677 128.76 radiation 1.0 270 > th dose independent rect. 8 9
679 128.76 radiation 40.0 10 < th dose dependent rect. 6 5
711 128.84 temperature 10.0 90 > th dose independent rect. 5 17
731 128.88 temperature 30.0 90 < th dose independent rect. 5 6
747 128.95 humidity 90.0 270 < th dose independent rect. 8 8
853 129.19 wind 9.0 270 < th dose dependent rect. 21 6
891 129.26 humidity 60.0 10 > th dose dependent rect. 6 6
911 129.31 atmosphere 1010.0 270 < th dose independent rect. 14 8
923 129.37 temperature 30.0 270 < th dose dependent rect. 3 5
980 129.56 wind 9.0 10 < th dose independent rect. 9 21
983 129.57 radiation 40.0 270 < th dose independent rect. 12 10
999 129.61 atmosphere 995.0 270 > th dose independent rect. 8 9